CX297739

Overview
NameCX297739
Unique NameCX297739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297739_ssr277 microsatellite CX297739_ssr277:277..286. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297739 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:   11 RVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 214
            +VDQPGMIG VG+ILG +NVNV+FMSVGR   RK A+MAIGVDE+P  +TL++IG V AIEEFVFLKL
Sbjct:  557 QVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
The following BLAST results are available for this feature:
BLAST of CX297739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SERA_ARATH1.298e-2072.06D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC06004G02SK RindPdig24 Citrus clementina cDNA clone C06004G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297739 ID=CX297739; Name=CX297739; organism=Citrus clementina; type=EST; length=742bp
GATTCGGCCGAGGGTTGATCAGCCGGGTATGATCGGCACAGTGGGAAGTA
TTTTGGGAAGTGAGAATGTGAATGTCAGTTTCATGAGTGTTGGAAGGGTT
GCTCCCCGGAAGCATGCAGTGATGGCAATTGGAGTGGATGAACAACCCCG
CAAAGAAACTTTGAAAAAGATTGGCGATGTTCCCGCCATAGAAGAGTTTG
TTTTCCTTAAGTTGTAATGTGTCTCAGCGTCACCACCACATCCAAATATT
TTACGCTATTGTTTTTTCCGTCCTCGGAGAGAGAGAAATTGGTGTCTTTA
CCGCATTGTAGTGCACGATTCTTAGGACTTTCATTTTACTGTTCTTTGTT
AGGCTGGCAGTTTTAGGAAAGATAAATGAATAATTAATTGTGCTTTGCGA
AGAAGGGTTTGTTGTGTGCTTTCCTCGTGCCGAATTCGGCACGAGGAGAG
AACTAGTCTCCGTTTTTTTTTTTTTTTTTTTGATATAAACTATAAGTACT
CACCGAAGGATGTATAAATAGATTGTTTAAAAGAAGAACAAAAGAGTTGG
TGGGTGAATCGATGACATCGATGATGATCCCAACACTTGTACTGATAACG
CAATTGATTACGTTAGCACTGGCCTGATTAACGCACCTCGTGCCGAATTC
GGCACGAGGAGTAAATGAATTCTGATAATTCTGAGTCGAGACAGAGACTA
TCAAAGGGCATTATAAACTTGCAAGATCGATATCCGACCAGC
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