CX297755

Overview
NameCX297755
Unique NameCX297755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX297755_ssr233 microsatellite CX297755_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.487e-47
Identity = 91/116 (78.45%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV+RVWGIGRY
Sbjct:  212 GKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.370e-45
Identity = 90/116 (77.59%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV RVW IGRY
Sbjct:  212 GKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 6.799e-45
Identity = 88/116 (75.86%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  213 GKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.160e-44
Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  213 GKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.856e-43
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WSADGSTLFSGYTDG+IRVWGI RY
Sbjct:  213 GKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.731e-43
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WSADGSTLFSGYTDG+IRVWGIGR+
Sbjct:  213 GKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.050e-38
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 354
            G+DGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWSADGSTL++GYTDG IR++ I  +
Sbjct:  228 GKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 74/114 (64.91%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 348
            G+DG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WSADGSTL+SGYTDG IRVW +G
Sbjct:  213 GKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.622e-30
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 345
            G+DG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  211 GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CX297755 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.622e-30
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    7 GEDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 345
            G+DG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  211 GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CX297755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GBLP_MEDSA9.487e-4778.45Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN1.370e-4577.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH6.799e-4575.86Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA1.160e-4474.14Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC2.856e-4372.41Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL3.731e-4371.55Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ8.050e-3863.79Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE3.059e-3764.91Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_RAT3.622e-3055.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG3.622e-3055.75Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionC06004H06SK RindPdig24 Citrus clementina cDNA clone C06004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297755 ID=CX297755; Name=CX297755; organism=Citrus clementina; type=EST; length=539bp
GGCCGAGGGGAAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAA
AAGACTCTACTCGCTCGACGCTGGTGCTGTCATTCACGCGCTCTGCTTCA
GTCCTAATAGGTATTGGTTGTGTGCGGCGACTGAGCAGAGTATAAAGATC
TGGGATTTGGAGAGCAAGAGCATTGTCGAGGATCTTAAGGTTGATCTTAA
GACCGAGGCCGAGAAATCTGAGGCCACCACCGCCACCACCACCATAAAAA
AGAAGAACATTTACTGCACAAGCTTGAACTGGAGTGCTGATGGAAGCACC
TTGTTCAGTGGTTATACAGATGGTGTGATCAGAGTCTGGGGTATTGGCCG
TTATTGAAAACTGCTTGAGTAATTGCAAACTGCTGTTCTTTTTCGATTAC
AAACTAGTTTCTCGACTTTGTAGGCAGTTTCAGACCTATTTAAGATTTAA
GATTTTGTTCAAAATGTTTTTAAGGATATTTTGTTCTCTTTATTTGGATC
TTATATGGCTTTGAGGCCTCTGCTGTTTTAAAAAAAAAA
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