CX297759

Overview
NameCX297759
Unique NameCX297759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX297759 vs. ExPASy Swiss-Prot
Match: PP273_ARATH (Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.317e-32
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 2 
Query:   20 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEG 334
            ++D+GA Y++ MV+S LRPNLAVYNRL  +L++ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV  +LDD  +  SEELQEFVK EL K G
Sbjct:  435 KIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGG 539
The following BLAST results are available for this feature:
BLAST of CX297759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP273_ARATH3.317e-3262.86Pentatricopeptide repeat-containing protein At3g49... [more]
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Properties
Property NameValue
Genbank descriptionC06004H10SK RindPdig24 Citrus clementina cDNA clone C06004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297759 ID=CX297759; Name=CX297759; organism=Citrus clementina; type=EST; length=745bp
GATTCGGCCGAGGGTGAATAGGGTTGATGATGGAGCGACGTATTTTAGGA
AGATGGTAGACTCGGGTTTGAGGCCTAATTTGGCAGTGTATAACAGATTG
GTTGGTAAGTTGGTTCAAGTGGGGATGCTTGATGAGGCGAAGTCATTCTT
TGATATAATGGTGAAGAAGCTGAAGATGGATGATGCAAGTTATAAGTTTA
TGATGAAGGCATTGAGTGATGGGGGGAAATTGGATGAGATACTTGAGATT
GTAGGTGGGATCTTGGATGATGGTGGCATTGAGTTTAGTGAGGAGTTGCA
GGAGTTTGTGAAAGGGGAATTGAGCAAGGAAGGGAGAGAAGAAGAGGTGG
TGAAGCTTATGGAGAAGAAGGAAAGGGAAAAGGCTGAAGCTAAGGCTAGA
GAAGCAGAAGCTGCAGAAGCGGCCAAGAGGAGTGCAAGAGCTGCCATCGC
TTCTTTGATACCATCGAAGTTTGGAGATAAAGTAGGTGGTACAGAGATGG
CTGACAATGCAAATGCTAATGAAGCTGCTTCTGTGGCTGAAGCACAGGCT
GGGAAAGAAGTGAATCTTGAGGAAGCAACTGCTGTAGAATCTGCCTCAGC
TGATGCAAATACGACATAGCACAACCGAGAGAGTAACTGCCTGAATATGT
TGATGGGGAAATGATGTTCCTTTTTCTGCAATGAAATTGTTTGGAGAATG
AAACCCTGTGTCATTTGCTTCTTTGAAATCATTAATACTTTGTAA
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