CX297876

Overview
NameCX297876
Unique NameCX297876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15059 contig Ccv1_Contig15059:43..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX297876 vs. ExPASy Swiss-Prot
Match: EIF3M_DICDI (Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 41/137 (29.93%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:  322 LASLMLTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIRDKRALFLGIANVLKE 723
            L+ ++    + +F   K SDKD+E  F VI  ++ K E+ DE++ +++ I   +   P +   +++KIL NL+N  +     R+ ++   + LA +    E +      IDS+L++WN+ I+ KR L+  I+N+ KE
Sbjct:   50 LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTENSQLKIKILTNLFNSFQPKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWNVSIQQKRKLYKLISNIFKE 186
The following BLAST results are available for this feature:
BLAST of CX297876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3M_DICDI3.397e-1329.93Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC06006B09SK RindPdig24 Citrus clementina cDNA clone C06006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297876 ID=CX297876; Name=CX297876; organism=Citrus clementina; type=EST; length=739bp
TCATTCGCCTCCTTGAACTGGGCAAAAAAAAAAAAAGGCAATTAGGGTTT
TTCAGTGATACTTATTTAAGCTGTTAATATCTCTGCTCGGCTGCCAGCAG
CAGAAACGCCGTCGATCCAAATTCGACGTTCAGAAAGCAGCAACAAAAAA
CTCGCAATGACAACAGTTGTTCCCACCTCCGAAGAAGATCCCGCTCTTGC
TGTCGTCCGCTTCACATCCGAGCTCGCCTGGGCCGATGCCGGTCCTGAGG
CTGCAGAAGAACAAGTTAATAGGCTTTGTTTGGAAGCACAAGAAAGCATG
GTCATGGGGAGATGGATGGATTTGGCTTCTCTGATGCTCACTTCGGCAGA
CTTGATGTTCTCAAAAGTGTCTGATAAAGATCTTGAGTGTATCTTCACCG
TTATCTGCAATCTTGTCACAAAGCCTGAAAGCCTTGATGAAGTGCATGAG
ATGACAAAACTTATATCTGGGAAAATCATTCAACAGCCAAATGACAAGCC
TGCAATGCGCTTGAAGATCTTGTTCAATCTCTATAATTTGCTAGAGAATC
CCTACAGCCGGTTCTTTGTATACATGAAAGCCCTTAATTTGGCAGTTAAT
GGAAAAGTGACTGAACATATAATACCTTCTTTCAAAAAGATAGATAGCTT
CTTGAAGGAGTGGAATATTGATATCAGGGATAAAAGAGCACTTTTTCTTG
GCATTGCTAATGTTCTCAAAGAAGTAGAGCTCATCCAGG
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