CX297882

Overview
NameCX297882
Unique NameCX297882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.563e-79
Identity = 147/241 (61.00%), Postives = 178/241 (73.86%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAA-NGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFLRGYL  C++++ RRL  F + FV++R+K+ +  N     + CAIDHI+DAQ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+Q+K+R E+ T+L  G+ +TE + ++LPYL A VKE LRL   IPLLVPHMNL +AKLGGF IP ESKI+VNAWWLANNP                    ++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLRGYLKICQEVKERRLQLFKDYFVDERKKLASTKNMSNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGPGHQITEPDTYKLPYLNAVVKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKNPEEFRPERFLEEGAKVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.548e-79
Identity = 146/241 (60.58%), Postives = 179/241 (74.27%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFLRGYL  C++++ RRL  F + FV++R+K+ +     ++ + CAIDHI+DAQ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+Q+K+R E+ T+L  G+ +TE + ++LPYL A VKE LRL   IPLLVPHMNL +AKLGGF IP ESKI+VNAWWLANNP                    ++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLRGYLKICQEVKERRLQLFKDYFVDERKKLASTKNMCNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGPGHQITEPDTYKLPYLNAVVKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKNPEEFRPERFLEEEAKVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.548e-79
Identity = 147/241 (61.00%), Postives = 179/241 (74.27%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFLRGYL  C+D++ RR+A F   FV++R++I ++     + + CAIDHI++A+ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+Q K+R E+ TVL  G  VTE +LH+LPYLQA VKE LRL   IPLLVPHMNL +AKL G+ IP ESKI+VNAWWLANNP                   +++A       DFRY+PFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLRGYLKICQDVKDRRIALFKKYFVDERKQIASSKPTGSEGLKCAIDHILEAEQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQSKLRNELDTVLGPGVQVTEPDLHKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGN----DFRYVPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.940e-79
Identity = 146/241 (60.58%), Postives = 179/241 (74.27%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++ RRL  F + FV++R K+ +     ++ + CAIDHI+DAQ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+Q+K+R EI  VL  G+ VTE ++ +LPYLQA +KE LRL   IPLLVPHMNL +AKLGG+ IP ESKI+VNAWWLANNP                   +++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLKGYLKICKEVKERRLKLFKDYFVDERMKLESTKSTSNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKVRDEIDRVLGPGHQVTEPDMQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPANWKRPEEFRPERFLEEESHVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.323e-78
Identity = 147/242 (60.74%), Postives = 179/242 (73.97%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMA--ANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++  RL  F + FV++R+K+ +  +    +++ CAIDHI+DAQ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+QQK+R EI  VL  G+ VTE ++ +LPYLQA VKE LRL   IPLLVPHMNL +AKLGG+ IP ESKI+VNAWWLANNP                    ++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLKGYLKICKEVKETRLKLFKDYFVDERKKLGSTKSTNNNNELKCAIDHILDAQRKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKLRDEIDRVLGAGHQVTEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESLVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 460          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.948e-78
Identity = 146/241 (60.58%), Postives = 178/241 (73.86%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++  RL  F + FV++R+ I +     ++ + CAIDHI+DA+ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHPE+QQK+R EI  VL  G+ VTE ++ +LPYLQA VKE LRL   IPLLVPHMNL +AKLGG+ IP ESKI+VNAWWLANNP                   +++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLKGYLKICKEVKETRLKLFKDYFVDERKNIGSTKSTNNEGLKCAIDHILDAEKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKVRDEIDRVLGVGHQVTEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.850e-78
Identity = 144/241 (59.75%), Postives = 179/241 (74.27%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANG-EKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRRE-ISTVLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++ +R   F + FV++R+K+ +    + +++ CAIDHI+DA+ KGEI E+NV+YIVENINVAAIETTLWS+EWAIAELVNHPE+Q K+R E +S +  G  VTE +LH+LPYLQA +KE LRL   IPLLVPHMNL +AKLGG+ IP ESKI+VNAWWLANNP                    ++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLKGYLKLCKEVKEKRFQLFKDYFVDERKKLGSTKSMDNNQLKCAIDHILDAKDKGEINEDNVLYIVENINVAAIETTLWSIEWAIAELVNHPEIQAKLRHELVSQLGPGVQVTEPDLHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPDQWKKPEEFRPERFLEEESKVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.850e-78
Identity = 145/241 (60.17%), Postives = 178/241 (73.86%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++ RRL  F + FV++R+K+ +     ++ + CAIDHI+DAQ KGEI ++NV+YIVENINVAAIETTLWS+EW IAELVNH E+Q K+R E+  VL  G+ VTE +L +LPYLQA +KE LRL   IPLLVPHMNL +AKLGGF IP ESKI+VNAWWLANNP                   +++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLKGYLKVCKEVKDRRLQLFKDYFVDERKKLGSTKSTYNEGLKCAIDHILDAQKKGEINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQEIQNKLREEMDKVLGPGHQVTEPDLEKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPALWKKPEEFRPERFLEEEAHVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 459          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.463e-77
Identity = 144/241 (59.75%), Postives = 177/241 (73.44%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHK-ISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFL+GYL  C++++ RRL  F + FV++R+K+ +     ++ + CAIDHI+DAQ KGEI ++NV+YIVENINVAAIETTLWS+EW IAELVNH ++Q K+R EI  VL  G+ VTE +L +LPYLQA +KE LRL   IPLLVPHMNL +AKL GF IP ESKI+VNAWWLANNP                   +++A       DFRYLPFGVGRRSCPGIILALPI G+
Sbjct:  222 NYGDFIPILRPFLKGYLKLCKEVKDRRLQLFKDYFVDERKKLGSTKSTTNEGLKCAIDHILDAQQKGEINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQKIQNKVREEIDRVLGPGHQVTEPDLQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLSGFDIPAESKILVNAWWLANNPAQWKKPEEFRPERFLEEESHVEANGN----DFRYLPFGVGRRSCPGIILALPILGI 458          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.559e-77
Identity = 142/241 (58.92%), Postives = 174/241 (72.20%), Query Frame = 3
Query:    6 NYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANG-EKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILALPIWGL 722
            NYGDFIP+LRPFLRGYL   ++++ RRL  F + FVE+R+K+ +     +    CAIDH++DAQ KGEI E+NV+YIVENINVAAIETTLWS+EW IAELVNHP++Q+K+R EI  VL   + +TE + H+LPYLQA +KE LRL   IPLLVPHMNL +AKL G+ IP ESKI+VNAWWLANNP                    ++A       DFRY+PFGVGRRSCPGIILALPI G+
Sbjct:  223 NYGDFIPILRPFLRGYLKLVKEVKERRLKLFKDYFVEERKKLTSTKSMTEENFKCAIDHVLDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPDIQKKLRAEIDRVLGPDHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLNDAKLAGYDIPAESKILVNAWWLANNPAHWKDPQVFRPERFLEEESGVEANGN----DFRYIPFGVGRRSCPGIILALPILGI 459          
The following BLAST results are available for this feature:
BLAST of CX297882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
TCMO_POPKI1.563e-7961.00Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_POPTM4.548e-7960.58Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_ARATH4.548e-7961.00Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
TCMO_GLYEC5.940e-7960.58Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_SOYBN1.323e-7860.74Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_PHAAU2.948e-7860.58Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_ZINEL3.850e-7859.75Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PEA3.850e-7860.17Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_CICAR1.463e-7759.75Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
TCMO_RUTGR5.559e-7758.92Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]

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Properties
Property NameValue
Genbank descriptionC06006C03SK RindPdig24 Citrus clementina cDNA clone C06006C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297882 ID=CX297882; Name=CX297882; organism=Citrus clementina; type=EST; length=731bp
GAGGCAATTATGGAGATTTTATTCCTTTGCTCAGGCCATTTTTAAGAGGG
TACTTGAACAAGTGCAGAGACTTGCAGAGTAGGAGGTTGGCTTTCTTTAA
CAACAATTTTGTTGAGAAAAGAAGGAAAATCATGGCTGCCAATGGAGAGA
AGCACAAGATAAGCTGCGCCATTGATCACATAATTGATGCTCAAATGAAA
GGGGAGATCACTGAAGAAAATGTTATTTACATTGTTGAGAACATAAATGT
GGCGGCAATAGAAACAACACTATGGTCCATGGAATGGGCAATAGCTGAGT
TAGTCAATCACCCAGAGGTTCAACAGAAGATCCGTCGTGAAATCTCGACA
GTCCTTAAAGGAAATCCGGTCACAGAATCAAACCTGCATGAATTACCGTA
CCTGCAAGCCGCAGTAAAAGAGGTACTAAGATTACACACTCCAATTCCGT
TGTTGGTGCCACATATGAATCTAGAAGAAGCAAAACTTGGAGGCTTCACA
ATTCCTAAAGAGTCCAAAATTGTGGTGAATGCATGGTGGCTAGCAAACAA
CCCCAAATGGTGGGAAAAACCTGAGGAGTTTCGGCCAGAGAGATTCTTGG
AAGAGGAATGTAATATTGATGCTGTTGCTGGTGGTGGCAAAGTTGACTTC
AGGTACTTGCCTTTTGGCGTGGGAAGGCGAAGCTGCCCTGGAATCATACT
TGCATTACCAATCTGGGGCTTGTGATTGCAA
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