CX297892

Overview
NameCX297892
Unique NameCX297892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297892 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.329e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:    6 SEDIGRQILTYGKRKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYKSVSSKF 200
            +EDIGRQILTYG+RK VDQFL  ++ +TL DI +   K+I+ PLTMA++GDV+NVP Y SVS +F
Sbjct:  434 AEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSVSKRF 498          
BLAST of CX297892 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    6 SEDIGRQILTYGKRKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYKSVSSKFHAK 209
            SEDIGRQ+LTYG+R  V+ FL  ++ ++  DI ++ QK+ISSPLTMASYGDV+++P Y +VSS+F +K
Sbjct:  437 SEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAVSSRFRSK 504          
BLAST of CX297892 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    6 SEDIGRQILTYGKRKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYKSVSSKF 200
            +EDIGRQILTYG+RK VDQFL  ++ +TL DI +   K+IS PLTM S+GDV+ VP Y ++SSKF
Sbjct:  438 AEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTISSKF 502          
The following BLAST results are available for this feature:
BLAST of CX297892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MPPA2_ARATH6.329e-1861.54Probable mitochondrial-processing peptidase subuni... [more]
MPPA_SOLTU1.080e-1757.35Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH2.405e-1761.54Probable mitochondrial-processing peptidase subuni... [more]
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Properties
Property NameValue
Genbank descriptionC06006D02SK RindPdig24 Citrus clementina cDNA clone C06006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297892 ID=CX297892; Name=CX297892; organism=Citrus clementina; type=EST; length=362bp
GGGTTTCAGAAGATATAGGGAGGCAGATTTTGACATATGGAAAGAGGAAG
TCTGTGGATCAATTCTTAAGCGTTCTCGAACACATCACTTTGGATGACAT
TACCAACATTGCCCAGAAAATTATTTCTTCACCTCTAACAATGGCATCTT
ATGGTGATGTGATTAATGTTCCTGGCTACAAATCTGTTAGCAGCAAGTTT
CATGCAAAATGATTACTGCCATTGCGATTCAAACTACGTGGTTGCTCATC
CCTTCACAATCACCCTGGCAATTTTCCAGCCCTCTCCATCTTAACAGCAG
CTAAATAGAATAAAATACGAGGGAATTTTGGCTCGGATTGACCAGGAAAA
TGATCCATGCAT
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