CX297897

Overview
NameCX297897
Unique NameCX297897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig151 contig Ccv1_Contig151:3..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.455e-60
Identity = 114/122 (93.44%), Postives = 122/122 (100.00%), Query Frame = 2 
Query:   68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58
Identity = 109/122 (89.34%), Postives = 120/122 (98.36%), Query Frame = 2 
Query:   68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.184e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.354e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2 
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
The following BLAST results are available for this feature:
BLAST of CX297897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH1.455e-6093.4440S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH2.323e-5889.3440S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT9.803e-4172.4140S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB9.803e-4172.4140S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE9.803e-4172.4140S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU9.803e-4172.4140S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN9.803e-4172.4140S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN9.803e-4172.4140S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA2.184e-4071.5540S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA6.354e-4071.5540S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC06006D07SK RindPdig24 Citrus clementina cDNA clone C06006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297897 ID=CX297897; Name=CX297897; organism=Citrus clementina; type=EST; length=685bp
ATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCAGA
CTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGG
AAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGT
TCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGT
TGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAG
TTTCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTA
TGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCA
GGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAA
AGGAAGAACAGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTC
AGATGCTGCCAAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGA
AGCCAATTTTCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTTGGG
TTTAGTTCCTGAAATGAAATCTAGTGTGTTGTGGATTTTGGTGCCATTGG
ATGTTTAGTTATATTTGCAGATTTTGAGTACTCCCCAAAAGACATTTTTG
AGTATTGAATGGCAATACATTCGTCTTTAACCCTG
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