CX297911

Overview
NameCX297911
Unique NameCX297911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:1178..1754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.136e-25
Identity = 48/94 (51.06%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307
            HITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  386 HITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 50/94 (53.19%), Postives = 72/94 (76.60%), Query Frame = 2
Query:   26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 307
            +ITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  363 NITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  382 IACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 337
            +HI  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+  +AVT+ L+++ E  G  LKDF   + ++  I++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  408 VHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  382 IACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 331
            +HI  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+   AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 2
Query:   26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 307
            HI  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  406 HIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 337
            +HI  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F   AV + ++++ E  G  LKDF   L ++     +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LT++IQ + G    LK+F + L     + + + AL+ +VE FA+ F +PG
Sbjct:  382 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  376 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
The following BLAST results are available for this feature:
BLAST of CX297911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GLYC2_DICDI9.136e-2551.06Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI9.454e-2253.19Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_HUMAN3.041e-2051.02Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_ARATH3.972e-2044.55Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB6.775e-2051.02Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_PEA8.849e-2047.22Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEEL1.156e-1947.96Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_SOLTU7.491e-1944.55Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT7.491e-1947.47Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_MOUSE7.491e-1947.47Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC06006E09SK RindPdig24 Citrus clementina cDNA clone C06006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297911 ID=CX297911; Name=CX297911; organism=Citrus clementina; type=EST; length=577bp
GATTCGGCCGAGGCTGTGACCTTTGCACATTACTGTGAACAAGAATGCTG
TGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGTACT
CCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAATTGG
AGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGGAGT
ATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAGGAC
ATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGACAT
GCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAAAGT
ATCATCATTATTGTTACTGTGTTGTTAGCAACTCTTTAGTGTTGAAAAAC
AGAAAGAGAAGAAAAAAAATTGCATGCATCTTTGCCTTTTGTTGTCCTAG
GTTTAAACGCTTTCGTTTTAATTTTTTTTTTTTTTAATTGGTACCCACCA
TATTGTGAAAGCGAGATCCGTTTCTCTTTGGTCAAATGATGATTGTTCAT
CTACAAATAAAACAACAAATTTATGTA
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