CX297928

Overview
NameCX297928
Unique NameCX297928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.751e-53
Identity = 101/117 (86.32%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP CS T  EI+YLTDRIQNGGTEVVEAKAGAGSATLSMAYAA +FADACLRGLRGDA+++ECAYVAS VTELPFFASKVRLGR GI+E+Y LGPLNEYER G
Sbjct:  217 GHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYERMG 333          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.329e-52
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA VIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER G
Sbjct:  219 GHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIG 335          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.156e-51
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP  S T  EI+YLTDRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA V+ECA+V+S VTELPFFA+KVRLGR GI+E+YSLGPLNEYER G
Sbjct:  219 GHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIG 335          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.509e-51
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQV P CS T  EI YLT RIQNGGTEVVEAKAGAGSATLSMAYAA+KFADACLRGLRGDA ++EC++VAS VTELPFFASKVRLGR GIEEI SLGPLNE+ERAG
Sbjct:  219 GHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAG 335          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.575e-51
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP  S TP+EI+YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDA+VIEC++VAS VTEL FFA+KVRLGR G EE++ LGPLNEYER G
Sbjct:  221 GHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVG 337          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.575e-51
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP  S TP+EI+YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDA+VIEC++VAS VTEL FFA+KVRLGR G EE++ LGPLNEYER G
Sbjct:  221 GHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVG 337          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.575e-51
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPLLSQVKP  S TP EI+YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDA+V+EC++VAS VTEL FFA+KVRLGR G EE+Y LGPLNEYER G
Sbjct:  217 GHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVTELAFFATKVRLGRTGAEEVYQLGPLNEYERIG 333          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 3.718e-50
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 345
            GHAG+TILPLLSQ+KP CS TP EI+YLT RIQNGG EVVEAKAGAGSATLSMAYAA KFADACL  LRGDA +IECAYVAS VTELPFFASKVRLGR G+EEI  LGPLN+YER
Sbjct:  216 GHAGITILPLLSQIKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEILPLGPLNDYER 330          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.953e-39
Identity = 79/117 (67.52%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL+GL G   VIEC+YV ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ G
Sbjct:  204 GHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 320          
BLAST of CX297928 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.578e-39
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 GHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 351
            GHAG+TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL+GL G  +V+EC++V ST+TELPFFASKVRLG+ G+EE+  LGPL+++E+ G
Sbjct:  204 GHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEG 320          
The following BLAST results are available for this feature:
BLAST of CX297928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDHG2_ARATH2.751e-5386.32Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG_CITLA2.329e-5288.03Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA1.156e-5185.47Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_ORYSJ1.509e-5185.47Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG2_BRANA2.575e-5184.62Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA2.575e-5184.62Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH2.575e-5184.62Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG_SOYBN3.718e-5083.48Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM1_ARATH2.953e-3967.52Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM2_ARATH6.578e-3965.81Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC06006G02SK RindPdig24 Citrus clementina cDNA clone C06006G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297928 ID=CX297928; Name=CX297928; organism=Citrus clementina; type=EST; length=353bp
GGTCATGCTGGGGTTACTATTTTACCTCTTTTATCTCAGGTTAAACCATC
ATGCTCTCTCACCCCTACAGAAATTGACTACTTGACAGATCGTATCCAGA
ATGGTGGTACAGAAGTAGTTGAGGCAAAAGCTGGAGCTGGTTCGGCCACT
CTATCCATGGCATATGCTGCTGCCAAGTTTGCAGATGCTTGTCTCCGAGG
TTTGAGGGGGGATGCCAGTGTTATTGAGTGTGCATACGTGGCTTCTACGG
TGACTGAACTCCCTTTCTTTGCATCCAAGGTACGGCTTGGCCGTGCTGGA
ATTGAGGAAATTTACTCACTTGGCCCATTGAATGAGTATGAGAGGGCTGG
TTT
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