CX297929

Overview
NameCX297929
Unique NameCX297929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8119 contig Ccv1_Contig8119:564..1298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.656e-19
Identity = 38/47 (80.85%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    4 ALLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LL+QPYDKSSLK+IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RR
Sbjct:  154 SLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRR 200

HSP 2 Score: 33.8834 bits (76), Expect = 6.656e-19
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++ELSKVVAKQ+EEGKV +
Sbjct:  199 RRKELSKVVAKQSEEGKVAL 218

HSP 3 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 2 
Query:  587 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKGLVSDLQKTTDEYMKKID 730
            +VA+RNIRRDALK+Y+KL+KEKKLSEDNVK L SDLQK  D YMKKI+
Sbjct:  215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIE 262
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.132e-18
Identity = 36/47 (76.60%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    4 ALLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LL+ PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RR
Sbjct:  106 SLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRR 152

HSP 2 Score: 34.6538 bits (78), Expect = 1.132e-18
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++ELSK+VAKQAEEGKV +
Sbjct:  151 RRKELSKIVAKQAEEGKVAL 170

HSP 3 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  587 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKGLVSDLQKTTDEYMKKID 730
            +VA+RNIRRDA+K+Y+KL+KEKKLSEDNVK L SDLQK  DEY+KK+D
Sbjct:  167 KVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVD 214
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.651e-16
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 ALLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LLI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RR
Sbjct:  150 SLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRR 196

HSP 2 Score: 29.6462 bits (65), Expect = 1.651e-16
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL+KVV+K AEEGKV +
Sbjct:  195 RRKELAKVVSKLAEEGKVAV 214

HSP 3 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:  587 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKGLVSDLQKTTDEYMKKID 730
            +VAVRNIRRDALK+YEKL+KEKKLSEDNVK L +DLQK TDEYMKK++
Sbjct:  211 KVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVE 258
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:  587 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKGLVSDLQKTTDEYMKKID 730
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVK L +DLQK TDEYMKKI+
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIE 253

HSP 2 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 ALLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RR
Sbjct:  145 SLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRR 191
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:  587 QVAVRNIRRDALKAYEKLQKEKKLSEDNVKGLVSDLQKTTDEYMKKID 730
            +VA+RNIRRDA+KAY+KL+KEKKLSEDNVK L +DLQK TDEYMKKI+
Sbjct:  206 KVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIE 253

HSP 2 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 ALLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RR
Sbjct:  145 SLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRR 191
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_NATTJ (Ribosome-recycling factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 33/47 (70.21%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRN 147
            L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERRN
Sbjct:   64 LVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRN 110
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.341e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LIQPYDKSSL  +EKAI  SD+G+TP+NDG VIRL +P LTS+RR
Sbjct:   62 ILIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRR 107

HSP 2 Score: 26.9498 bits (58), Expect = 3.341e-13
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL K+ AK AEEG+V +
Sbjct:  106 RRKELVKIAAKYAEEGRVAI 125
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.638e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RR
Sbjct:   62 LQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRR 107

HSP 2 Score: 27.335 bits (59), Expect = 5.638e-13
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL K+ AK AEEGKV +
Sbjct:  106 RRKELVKLAAKYAEEGKVAI 125
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.638e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RR
Sbjct:   62 LQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRR 107

HSP 2 Score: 27.335 bits (59), Expect = 5.638e-13
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3 
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL K+ AK AEEGKV +
Sbjct:  106 RRKELVKLAAKYAEEGKVAI 125
[Close]
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L+IQPYDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR
Sbjct:   65 LVIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERR 110
The following BLAST results are available for this feature:
BLAST of CX297929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RRFC_ARATH6.656e-1980.85Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
RRFC_DAUCA1.132e-1876.60Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_SPIOL1.651e-1678.72Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ORYSJ7.903e-1579.17Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI7.903e-1579.17Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRF_NATTJ1.947e-1370.21Ribosome-recycling factor OS=Natranaerobius thermo... [more]
RRF_ANASP3.341e-1369.57Ribosome-recycling factor OS=Anabaena sp. (strain ... [more]
RRF_SYNP65.638e-1365.22Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNE75.638e-1365.22Ribosome-recycling factor OS=Synechococcus elongat... [more]
RRF_GEOSW9.660e-1373.91Ribosome-recycling factor OS=Geobacillus sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06006G03SK RindPdig24 Citrus clementina cDNA clone C06006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297929 ID=CX297929; Name=CX297929; organism=Citrus clementina; type=EST; length=731bp
GAGGCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGA
GAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTG
AAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAACTGT
CAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTAGTTATGCTTCTT
TTATTCACGATTTCATAGGTTTCTTCTCCTCTTTGTAATCTATCTAATAC
TAAAGTTCAGATTTTCATTATCTTTTCAGTGCTTATAATTTTCATGAAGG
TAGATATCACAGGAAATCTGTACAAGACGGTGTTTTCTAAATTAAAGAAG
TTTTTGGTCTAAAATTTATAGTTTGCTTTGACGAATGTAAAGGTATTGGC
ATGAAATACTTTAAATTACTTTGAGAGGAGTTTCATTGTGGTTTATCAGG
GTACTAAGTCATAACCTGAGTACATGGATTTTAAAGTTGCATGTGTTGGT
TAATTTTTATACACAAATCTCTGTGTTTACTGATATAAATTCCCCGGTTT
TGTCATCTTTGCTGCACTGCCCCCATCAATCATTTGCAGGTGGCAGTTAG
GAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGA
AGAAGCTCTCTGAAGACAATGTGAAAGGACTTGTCAGTGATTTACAGAAA
ACTACAGATGAGTATATGAAGAAGATTGATA
back to top