CX297936

Overview
NameCX297936
Unique NameCX297936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX297936 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:   14 GDDPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDVEVVVNTDDRSS 181
            GDDPW+EFC MVRKIFIYT EEVKKLSPK KL  N  +   K D E   NT+ RSS
Sbjct:  605 GDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAEENGNTEGRSS 659
The following BLAST results are available for this feature:
BLAST of CX297936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFA_ARATH5.654e-1266.07Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC06006G12SK RindPdig24 Citrus clementina cDNA clone C06006G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297936 ID=CX297936; Name=CX297936; organism=Citrus clementina; type=EST; length=689bp
GATTCGGCCGAGGGGAGATGATCCATGGCATGAGTTCTGTAGCATGGTGA
GGAAAATTTTCATCTACACAGCAGAAGAAGTAAAGAAGCTGTCGCCCAAG
GTAAAACTTCCAGGTAACGAGGAGCTCAATGCAGGCAAGCCAGATGTTGA
AGTGGTTGTCAACACTGATGATCGGTCATCTATTGTTGGACCTGGGTGTG
CTGATATGCCTATGCAGTAAGATATCAGCAGAGTATGGAGGTAATGGTAA
GTTGACTGCCTTTAAGATTCGCCCTATAGTAGAATCATGAGGTTTAGAGA
GAAGCAGCCTTTATAGTCGACATGCCGTCCAAAGAGGGAACTTGCCTTAA
AGCATAAGAGTTTGGGTGTTAGAAGTTTCTTATTTTGCTTTTGCCAAGGG
AATCTAATAGATGCTTGCTTATTCAAAGTCCGGGTGAACGTGAAGTTTGT
TGCGTCATATCTGGCGCCCAGCTTATGAGACAGAACTTGTTCCTTCTCAT
TTCTTGTTTCGTCTTTTTTTCTTTTTTTCCTAATATATCTTCTATACACA
AGACACGGTAACATTTTCCCTTTGTATATAAGTATATATAGTCTTGCTCT
CTCCTGTTTTGGCTCGCATGTATATGTACCCCTCTCTGACTCCTTCCCTG
AAAGAATCTTTTCAGCTGAATTGATGGAAGATTTTCTTG
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