CX297940

Overview
NameCX297940
Unique NameCX297940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297940 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.842e-40
Identity = 83/151 (54.97%), Postives = 113/151 (74.83%), Query Frame = 2
Query:    2 EEMASYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNKGRIKXXXXXXXXXXXXFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 454
            E+  S + EVK+TY+ ++ FRVE   V  DV++AVY+K +I+            F++KLGLEL +++E+QHK   ET+  P G+V++PMAGLVVKVL  + T+VEEGQP+LVLEAMKMEHVVKAP++G VHGLQ+  G+QVSDGSVLF ++
Sbjct:  579 EQNGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVK 729          
BLAST of CX297940 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   26 EVKATYLGEHKFRVEFDVVSMDVHLAVYNKGRIKXXXXXXXXXXXXFKQKLGLELPDEDE-TQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQG 457
            E++ T  G+  FRVE   +SM+V LA Y K   K            FKQK+G+E  +++E  QH+TS ET++ PPG++++PMAGLVVKVL  +  KV++GQPILVLEAMKMEHVVKAP++G +  L+V AGQQVSDGS LFR++G
Sbjct:  590 ELRVTRAGKCDFRVEAAGLSMNVSLAAYLKDGYKHIHIWHGSEHHQFKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIKG 734          
BLAST of CX297940 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.016e-31
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 2
Query:   26 EVKATYLGEHKFRVEFDVVSMDVHLAVYNKGRIKXXXXXXXXXXXXFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 454
            +VK    G+H FRV+   +  DV LA Y+K                ++Q L  E   +D +Q   S E  + P GSVL+PMAGLVVKVL  DG +VEEGQP++V+EAMKMEHVVKAP  G V GL+ TAGQQV D SVLF ++
Sbjct:  590 DVKVDSRGDHDFRVDVGGLQTDVTLAFYSKDNCNHIHIWHGKHHHHYRQTLRAEQSPDDSSQPSASSEARSHPKGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVK 732          
BLAST of CX297940 vs. ExPASy Swiss-Prot
Match: BCCP_SOLLC (Biotin carboxyl carrier protein of acetyl-CoA carboxylase (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  248 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 454
            G+V++PM GL VKVL  DG KV+EGQP+LVLEAMKMEHVVKAP  G V GL++  GQ V DG  LF L+
Sbjct:    1 GTVVAPMVGLEVKVLVKDGEKVQEGQPVLVLEAMKMEHVVKAPANGYVSGLEIKVGQSVQDGIKLFALK 69          
The following BLAST results are available for this feature:
BLAST of CX297940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MCCA_SOYBN2.842e-4054.97Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ARATH1.614e-3553.79Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ORYSJ7.016e-3149.65Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
BCCP_SOLLC1.051e-1865.22Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
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Properties
Property NameValue
Genbank descriptionC06006H04SK RindPdig24 Citrus clementina cDNA clone C06006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297940 ID=CX297940; Name=CX297940; organism=Citrus clementina; type=EST; length=595bp
CGAGGAGATGGCTTCGTATATTTCAGAAGTCAAAGCAACATATCTAGGCG
AGCATAAGTTTAGAGTTGAATTTGATGTTGTTAGCATGGATGTCCATTTA
GCTGTTTATAACAAGGGTCGGATAAAGCACATTCATGCATGGCATGGATT
GCATCACCATCATTTTAAACAAAAGTTGGGGCTCGAGTTGCCTGATGAAG
ACGAAACTCAACATAAAACCAGTTTTGAGACTGCAACTGGTCCTCCAGGA
TCTGTGTTGTCTCCCATGGCTGGTTTAGTGGTCAAGGTTCTTGCGAATGA
TGGGACAAAGGTGGAGGAAGGACAACCTATTTTAGTCTTGGAAGCAATGA
AGATGGAGCATGTAGTGAAGGCACCAACTACTGGGGTAGTCCATGGGCTT
CAAGTGACAGCTGGACAACAGGTTTCGGATGGTAGTGTTCTCTTTAGGCT
TCAAGGTTGAAGTGGATCATATGCTCGGCCAGGATGTATAGGATCTATTG
TGGAGTTCCTTTCCATTACAGAATCTTGCTCGAGAATCACGCAGCATGTA
TCAATGAATAAAGGATTTGACCAACTGAAAAAAAAAAAAAAAAAA
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