CX297944

Overview
NameCX297944
Unique NameCX297944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig848 contig Ccv1_Contig848:73..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 3
Query:   15 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  C+              CC+GIKSLNSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:    5 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 3
Query:   15 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  C+              CC+GIKSLNSAA TTP RQ+ C C+K+AA  I  +N  LASGLP +CGVNIPY+ISPS DC+ V+
Sbjct:    1 MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 3
Query:   21 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            +KLAC VL+MCMV+ AP+A+ A++CG VTS L  C+              CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct:    5 MKLACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.095e-28
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 3
Query:   21 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            +KLAC VL++CMV+ AP+A+ A++CG VTS L  C+              CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS + +C+ V+
Sbjct:    5 MKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   21 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 362
            +KLACAVLL C+V+ AP A+A +TCG V+S L  C+              CC GIK+LN+AA TTPDR++ CNCLK+AA +I+ +N   A+GLP  CGV+IPY ISPS +C+ V
Sbjct:    7 IKLACAVLL-CIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPLGGG---CCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 3
Query:   33 CAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            C VL+MCMV+ AP+A+ A++CG VTS L  C+              CC G+K L +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    1 CVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 3
Query:   18 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            ++K+ C  L+MC+V+ AP+A++A+TCG+V ++L  C+              CC G+++LNSAA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +C VNIPY+IS S +C+ +R
Sbjct:    3 SMKVVCVALIMCIVI-APMAESAITCGRVDTALAPCLGYLQGGPGPSAQ--CCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 3
Query:   18 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            ++KLAC VL+MCM++ AP+A+ A++CG VT  L  C+              CC G+K L +AA TTPDRQ+ CNC+K+AA SI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct:    4 SMKLACVVLVMCMIV-APMAEGAISCGAVTGDLSPCLTYLTGGPGPSPQ--CCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 3
Query:   15 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            +A K+AC V+L CMV+ AP A+A +TCGQVTS+L  C+              CC G+K+L ++A TT DRQ  C CLK+AAG+I  +NL  A+GLP  CGVNIPY+ISPS DCS+V+
Sbjct:    3 IAGKIACFVVL-CMVVAAPCAEA-ITCGQVTSNLAPCLAYLRNTGPLGR---CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CX297944 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.283e-26
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   18 ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 365
            ++ LAC  L+MCMV+ AP+A+AAV+CG VT  L  C+              CC+G+K L +AA TT DRQ+ CNCLKTAAG+I NLN   A+ LP +C VNIPY+IS + +C+ ++
Sbjct:    4 SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDS--CCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
The following BLAST results are available for this feature:
BLAST of CX297944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP2_GOSHI9.570e-3358.97Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI9.570e-3358.97Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP6_LENCU6.419e-2953.04Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.095e-2852.17Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_SPIOL9.269e-2852.63Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP4_LENCU9.269e-2853.15Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP_CICAR3.522e-2749.14Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP5_LENCU3.522e-2750.00Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_TOBAC1.025e-2652.99Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP3_LENCU2.283e-2649.14Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionC06006H08SK RindPdig24 Citrus clementina cDNA clone C06006H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297944 ID=CX297944; Name=CX297944; organism=Citrus clementina; type=EST; length=677bp
GAGGGACATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCTAATG
TGCATGGTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTGGCCA
AGTGACAAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCCGGTG
GAGGCGCTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAACTCC
GCAGCCACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGAAAAC
CGCTGCTGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGCCTCC
CACGCCAGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGTTGAC
TGCAGCAGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGAAGTA
TTATTATATATAATATGAATATAAAATGGAATAATAAAGTGGGTGATATG
GACTCTCCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATATATGT
ACCAGAGTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATAATAT
ACTACTTTGTTATTTAAAAACCCTGGCCGATTATAACATCCAGAAGGAAT
CCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCAGATCTTCGTC
AAGACGTTGACCGGGAAGACGATTACC
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