CX298054

Overview
NameCX298054
Unique NameCX298054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14517 contig Ccv1_Contig14517:280..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_ORYSJ (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 4.222e-96
Identity = 171/213 (80.28%), Postives = 192/213 (90.14%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLL-WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV +VFSSVA +YDLMNDLMS GLHRLWKDRL+SKLNPFPGMKHLDVAGGTGDVAFR L+ +NS+  RA+Q  L D ++EET+IYVCDINPNMLNVGKKRA ERGY++   L W++GDAEAL FED +MDGYTIAFGIRNVTHIEKAL+EAYRVLKRGGRFLCLELSHVD+P+FKE+YD YSFSVIPA+GELVAGDR SYQYLVES+RRFP Q
Sbjct:   50 LVGNVFSSVASSYDLMNDLMSVGLHRLWKDRLISKLNPFPGMKHLDVAGGTGDVAFRALERINSVSHRAMQGTLTD-IEEETQIYVCDINPNMLNVGKKRASERGYKEGHCLSWIQGDAEALSFEDGSMDGYTIAFGIRNVTHIEKALSEAYRVLKRGGRFLCLELSHVDVPLFKEIYDVYSFSVIPAVGELVAGDRQSYQYLVESIRRFPNQ 261          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_ARATH (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Arabidopsis thaliana GN=COQ5 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 7.962e-95
Identity = 173/213 (81.22%), Postives = 192/213 (90.14%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQD-KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV +VF++VA +YD+MND+MSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D V S+KRRALQ V E  L EET+IYVCDINPNMLNVGK+RA ERG +D KSL+WVEGDAEAL F+D++MDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV+IPVFK LYD YSF VIP +GEL+AGDR SYQYLVESVRRFPPQ
Sbjct:   44 LVGNVFTNVASSYDIMNDVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVYSVKRRALQKVDEASL-EETQIYVCDINPNMLNVGKQRAAERGLRDNKSLVWVEGDAEALSFDDNSMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVEIPVFKNLYDLYSFQVIPNLGELIAGDRESYQYLVESVRRFPPQ 255          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_HUMAN (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Homo sapiens GN=COQ5 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.263e-64
Identity = 129/228 (56.58%), Postives = 162/228 (71.05%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-------ALQDVLEDDLQEE----------TRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF SVAK YD+MND+MS G+HR+WKD L+ K++P PG + LDVAGGTGD+AFR L+ V S  +R       A Q++  +++ +E          +R+ VCDIN  ML VGK++AL +GY+   L WV GDAE L F+D   D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFP Q
Sbjct:   68 VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVGKQKALAQGYR-AGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQ 294          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_PONAB (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Pongo abelii GN=COQ5 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.493e-64
Identity = 128/228 (56.14%), Postives = 161/228 (70.61%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-------ALQDVLEDDLQEE----------TRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF SVAK YD+MND+MS G+HR+WKD L+ K+ P PG + LDVAGGTGD+AFR L+ V S  +R       A Q++  +++ +E          +R+ +CDIN  ML VGK++AL +GY+   L WV GDAE L F+D   D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFP Q
Sbjct:   68 VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVMCDINKEMLKVGKQKALAQGYR-AGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQ 294          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_CHICK (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.619e-63
Identity = 128/229 (55.90%), Postives = 154/229 (67.25%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED-----------DLQEE-------TRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +  VF +VA+ YD+MND MS G+HR+WKD LV K+NP PG   +DVAGGTGD+AFR L+ V S++ R LQ  L               QEE       +++ VCDIN  ML  GK++A   GY +  L WV G+AE L F+D   D YTIAFGIRNVT I+ AL EAYRVLK GGRFLCLE SHV  P+   LYD YSF VIP +GE++AGD  SYQYLVES+RRFPPQ
Sbjct:   51 IYQVFENVAEKYDVMNDSMSLGIHRVWKDILVHKMNPSPGTLLVDVAGGTGDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVCDINKEMLKAGKQKAQHLGYSE-GLSWVLGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPPQ 278          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_BOVIN (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Bos taurus GN=COQ5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.371e-62
Identity = 124/228 (54.39%), Postives = 157/228 (68.86%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL-----------------EDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF SVAK YD+MND+MS G+HR+WKD L+ K+ PFPG + LDVAGGTGD+AFR L+ V +  +R  +  L                 E+D    + + VCDIN  ML +GK++A  +GY+   L W+ GDAE L F+D+  D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+   LYD YSF VIP +GE++AGD  SYQYLVES+R+FP Q
Sbjct:   68 VYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPFPGTQLLDVAGGTGDIAFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCDINKEMLKIGKQKARAQGYK-AGLAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPSQ 294          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_RAT (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Rattus norvegicus GN=Coq5 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.988e-62
Identity = 129/228 (56.58%), Postives = 154/228 (67.54%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI----KRRALQDVLEDDLQEETRIY-------------VCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF SVA+ YDLMND+MS G+HR WKD L+ K++P PG + LDVAGGTGD+AFR L  V +     +RR L+       +E  R Y             VCDIN  ML VGK++AL RG+    L WV GDAE L F+D   D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+   LYD YSF VIP IGE++AGD  SYQYLVES+R+FP Q
Sbjct:   68 VYQVFQSVARKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDVAGGTGDIAFRFLSYVQTQHERKQRRQLRTRQNLSWEEIARKYQSKEDPLGGSLVMVCDINREMLKVGKQKALARGHT-AGLAWVLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPNQ 294          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_MOUSE (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Mus musculus GN=Coq5 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 1.979e-61
Identity = 125/230 (54.35%), Postives = 155/230 (67.39%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL-----------------EDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            S V  VF +VAK YDLMND+MS G+HR WKD L+ K++P PG + LD+AGGTGD+AFR L  V +  +R  +  L                 E+D    +   VCDIN  ML VGK++AL++G+    L WV GDAE L F+D + D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE   V+ P+   LYD YSF VIP IGE++AGD  SYQYLVES+R+FP Q
Sbjct:   66 SKVYQVFENVAKKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDMAGGTGDIAFRFLSYVQAQHQRRQRRQLRTQQNLSWEEIAKKYQNEEDSLGGSLATVCDINREMLKVGKQKALDQGHT-AGLAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPNQ 294          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_XENLA (Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial OS=Xenopus laevis GN=coq5 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.733e-60
Identity = 122/229 (53.28%), Postives = 156/229 (68.12%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL--EDDL-----------QEE-----TRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF +VA NYD+MND MS G+HR WKD L+  + P PGM+ LD+AGGTGD++FR ++ + + + + ++  L  + DL           +EE     +R  +CDIN  ML VG +++L  GY +  L WV GDAE L F D   D YTIAFGIRNVTHIE+AL EAYRVLK GGRFLCLE SHV+ P+  ++YD YSF VIP +GE++A D  SYQYLVES+RRFP Q
Sbjct:   50 VYKVFENVAHNYDIMNDAMSLGVHRFWKDWLLQLMKPTPGMQLLDMAGGTGDISFRFINYIRAQREKWIRQELKFQQDLSWPDISKTYQNKEEGSLMGSRAVICDINKEMLKVGLQKSLRLGYSE-GLSWVAGDAEELPFGDDKFDVYTIAFGIRNVTHIEQALQEAYRVLKPGGRFLCLEFSHVNNPLLSKIYDVYSFQVIPVLGEVIAKDWKSYQYLVESIRRFPSQ 277          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_DICDI (Ubiquinone biosynthesis methyltransferase coq5, mitochondrial OS=Dictyostelium discoideum GN=coq5 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.368e-60
Identity = 117/226 (51.77%), Postives = 155/226 (68.58%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILD----------TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKS---LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            S+V  VF SV+ +YDLMND+MS G+HRLWKD L++ LNP PG   LDVAGGTGD++FR LD           +N       + +    L     ++  DIN +MLN GKKR L +GY D+S   + WV+G++E L F+D+T + YT++FGIRN T+I++ L EAYRVLK GGRFLCLE S V  P+ +  YD YSF+VIP +G+L++GDR SY YLVES+R+FP Q
Sbjct:   58 SMVKDVFDSVSSSYDLMNDVMSMGIHRLWKDELINTLNPTPGSHLLDVAGGTGDISFRFLDKIKTSPNYFPNINKSNNGGGEVLKSSSLPSSATVF--DINQSMLNEGKKRGLNKGYTDQSDPSIDWVQGNSEQLPFKDNTFNCYTVSFGIRNCTNIDQVLREAYRVLKPGGRFLCLEFSQVPNPLLRFAYDQYSFNVIPIMGQLISGDRDSYSYLVESIRKFPDQ 281          
The following BLAST results are available for this feature:
BLAST of CX298054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
COQ5_ORYSJ4.222e-9680.28Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_ARATH7.962e-9581.22Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_HUMAN3.263e-6456.58Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_PONAB9.493e-6456.14Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_CHICK1.619e-6355.90Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_BOVIN1.371e-6254.39Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_RAT3.988e-6256.58Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_MOUSE1.979e-6154.35Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_XENLA3.733e-6053.28Ubiquinone biosynthesis methyltransferase COQ5, mi... [more]
COQ5_DICDI6.368e-6051.77Ubiquinone biosynthesis methyltransferase coq5, mi... [more]

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Properties
Property NameValue
Genbank descriptionC06008B03SK RindPdig24 Citrus clementina cDNA clone C06008B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298054 ID=CX298054; Name=CX298054; organism=Citrus clementina; type=EST; length=642bp
GTCATTGGTTAGCCATGTTTTCAGCAGTGTTGCTAAAAACTATGATCTCA
TGAATGATTTGATGAGTGGTGGATTGCATAGATTGTGGAAGGATAGACTT
GTTTCCAAGTTGAATCCATTTCCGGGAATGAAGCACCTTGATGTTGCTGG
TGGAACAGGGGATGTTGCTTTCAGGATTTTAGACACTGTAAATAGCATCA
AACGAAGAGCACTCCAGGATGTTCTTGAAGATGATTTACAGGAGGAAACT
CGGATATATGTTTGTGACATCAACCCAAACATGCTAAATGTTGGTAAAAA
GCGTGCTTTAGAGAGAGGTTACCAGGACAAATCACTTTTGTGGGTGGAAG
GAGATGCAGAAGCCTTGTGCTTTGAAGACAGTACTATGGATGGTTACACA
ATTGCCTTCGGAATTAGGAATGTTACTCATATTGAGAAGGCTCTAGCTGA
AGCTTACAGGGTACTGAAACGTGGAGGAAGATTTCTGTGCCTTGAGCTGA
GCCACGTCGATATTCCTGTATTCAAGGAATTGTACGATTATTACTCATTT
TCAGTCATTCCAGCAATAGGGGAACTGGTAGCAGGTGATCGGGGTTCTTA
TCAGTACTTGGTTGAGAGTGTCCGCCGTTTTCCCCCTCAGGA
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