CX298056

Overview
NameCX298056
Unique NameCX298056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig737 contig Ccv1_Contig737:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.261e-22
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F SF+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE+VVKNPL
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPL 114          
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.261e-22
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F SF+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE+VVKNPL
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPL 114          
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1
Query:  295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F +F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE VVKNPL
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPL 114          
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1
Query:  295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660
            H +Y+F+RNGVCL Y EW+R     +  ++++KLM+G+LFS++S  +KM P + + G             F +F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+ LYVE VVKNPL
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPL 114          
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  301 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660
            +Y+FN++G C+ Y +WN+   + N  +D KL+FG+L+SLK+      P   +               FH ++T+TYKL + E+ S IK I+++ P   DLR+ LK IY+ ++VEYV+KNP+
Sbjct:    5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-----------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPI 114          
The following BLAST results are available for this feature:
BLAST of CX298056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TPPC1_RAT7.261e-2242.74Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_MOUSE7.261e-2242.74Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_HUMAN4.706e-2141.94Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_BOVIN4.706e-2141.94Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_DICDI1.369e-2038.02Trafficking protein particle complex subunit 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC06008B05SK RindPdig24 Citrus clementina cDNA clone C06008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298056 ID=CX298056; Name=CX298056; organism=Citrus clementina; type=EST; length=661bp
GAGGGAATGATTGTTTTGGTGATAATTTTTTGGGTCCTAAGAGTTTTGAT
ATGAACAGAAATTATTAATCCATATTTTATTTTATTAGATTATCACTAAC
TTATTAAAAACGACGCTGTTTGGGAACATTATAAATTTACAAGACGATCT
AACTTCCACTTGATTTCGAGCCCTCCTCTCAATTCTTCGTTTCAAATTCA
ATCTACTCTTCGCAGGAAAAAGAAAATGCAGTTCTTTGGAGGGTCAGAGA
TCAGTCCATCACCGCCGGTGCCAACGGCGTCCGGTAACAATGCCCACATG
ATGTACGTGTTCAATAGGAATGGCGTTTGTTTGCTTTACAGGGAATGGAA
TCGCCTTCTTCACACTCTCAACGCTCAACAAGACCACAAGCTCATGTTTG
GTCTTCTCTTCTCCCTCAAGTCCTTGACTGCCAAAATGGATCCCACTAAT
GCAGAGAAAGGAAACTTGGGGGTGCCCCAATTATCAGGCCAAGGTTGTTC
ATTTCACAGTTTTCGTACTAATACATACAAACTTAGTTTCATGGAAAGTC
CATCTGGAATCAAGATTATCTTGGTCACTCATCCCAGGACTGGTGATCTA
CGTGAGTCCCTAAAGTACATATACAACTTGTATGTTGAATATGTTGTCAA
GAATCCATTAT
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