CX298056
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.261e-22 Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+VVKNPL Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPL 114
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.261e-22 Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+VVKNPL Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPL 114
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21 Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1 Query: 295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE VVKNPL Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPL 114
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21 Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1 Query: 295 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE VVKNPL Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPL 114
BLAST of CX298056 vs. ExPASy Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20 Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 301 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPL 660 +Y+FN++G C+ Y +WN+ + N +D KL+FG+L+SLK+ P + FH ++T+TYKL + E+ S IK I+++ P DLR+ LK IY+ ++VEYV+KNP+ Sbjct: 5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-----------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPI 114 The following BLAST results are available for this feature:
BLAST of CX298056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX298056 ID=CX298056; Name=CX298056; organism=Citrus clementina; type=EST; length=661bpback to top |