CX298061

Overview
NameCX298061
Unique NameCX298061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298061_ssr389 microsatellite CX298061_ssr389:389..400. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.314e-102
Identity = 188/231 (81.39%), Postives = 200/231 (86.58%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPXXXXXXXXXXXXXXXXXXMKESSAAK 700
            +ITG +KEQLEKSPFLERL KKNYEVI FTDPVDEYLMQYLMDYEDKKFQNVSKEGLK+GKD+KDKELKESFKELTKWWKGALASENVDDVK+SNRL NTPCVVVTSKYGWS+NMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD ED  V+QTA+L+YQTALMESGF LNDPK+FAS IY +VKSSL ISP                    ESSAA+
Sbjct:  574 YITGTSKEQLEKSPFLERLTKKNYEVILFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIGKDSKDKELKESFKELTKWWKGALASENVDDVKISNRLANTPCVVVTSKYGWSSNMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDAEDESVKQTARLMYQTALMESGFMLNDPKEFASSIYDSVKSSLKISPDATVEEEDDTEEAEAESGTTESSAAE 804          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.956e-99
Identity = 174/205 (84.88%), Postives = 194/205 (94.63%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISP 622
            +ITG++KEQLEKSPFLERL KK YEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK+GKD+KDKELKE+FKELTKWWKG LASENVDDVK+SNRL +TPCVVVTSK+GWSANMERIMQSQTLSDA+KQAYMRGKRVLEINPRHPIIKEL++R+  DPED  V++TAQL+YQTAL+ESGF L DPKDFA+RIY++VKS LNISP
Sbjct:  570 YITGSSKEQLEKSPFLERLIKKGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKVGKDSKDKELKEAFKELTKWWKGNLASENVDDVKISNRLADTPCVVVTSKFGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKELKDRIASDPEDESVKETAQLMYQTALIESGFILTDPKDFAARIYNSVKSGLNISP 774          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.233e-92
Identity = 162/205 (79.02%), Postives = 189/205 (92.20%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISP 622
            ++TG++KEQLEKSPFLE+L KKNYEVI+FTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKD+K K+LKESFKELT WWK AL +E +D VK+SNRL NTPCVVVTSKYGWS+NME+IMQ+QTLSDASKQAYMRGKRVLEINPRHPIIKELR++V +D +  G++QTA+L+YQTALMESGF+L DPKDFAS IY +V+ SL++SP
Sbjct:  567 YLTGSSKEQLEKSPFLEQLTKKNYEVIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKLKDLKESFKELTDWWKKALDTEGIDSVKISNRLHNTPCVVVTSKYGWSSNMEKIMQAQTLSDASKQAYMRGKRVLEINPRHPIIKELRDKVAQDSDSEGLKQTARLVYQTALMESGFNLPDPKDFASSIYRSVQKSLDLSP 771          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.793e-50
Identity = 103/208 (49.52%), Postives = 143/208 (68.75%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNIS 619
            FITG ++E +  S F+ER+K++ +EVI+ TDP+DEY +Q L +Y+ KK  +V+KEGL+L +  ++K    E K  F+ L K  K  L  + V+ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM  K+ LEINP H +IK LRERV  D  D  V+    L+++TAL+ SGFSL DP+  ASRIY  +K  L+I+
Sbjct:  475 FITGESREAVASSAFVERVKRRGFEVIYMTDPIDEYCVQQLKEYDGKKLVSVTKEGLELPESEEEKKKFEEDKVKFENLCKVMKDIL-EKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHSVIKALRERVEADKNDKTVKDLVVLLFETALLSSGFSLEDPQLHASRIYRMIKLGLDIT 681          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP83_ANOGA (Heat shock protein 83 OS=Anopheles gambiae GN=Hsp83 PE=3 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 7.566e-50
Identity = 101/207 (48.79%), Postives = 145/207 (70.05%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            FITG + +Q++ S F+ER+KK+ +EVI+ T+P+DEY++Q L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L S+ V+ V VSNRL ++PC +VTS+YGWSANMERIM++Q L D+S   YM GK+ LEINP H II+ LR+R   D  D  V+    L+++TAL+ SGFSL++P   ASRIY  +K  L I
Sbjct:  473 FITGESIDQVKNSAFVERVKKRGFEVIYMTEPIDEYVIQQLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFENLCKVMKSVLESK-VEKVMVSNRLVDSPCCIVTSQYGWSANMERIMKAQALRDSSAMGYMAGKKHLEINPDHAIIETLRQRAEADKNDKAVKDLVILLFETALLSSGFSLDEPGTHASRIYRMIKLGLGI 678          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 91/207 (43.96%), Postives = 146/207 (70.53%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKE----SFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            ++TG +K++LE SPF+E+ +++ +EV+F T+P+DEY+MQ + D+EDKKF  ++KEG+   +  ++K+ +E    +++ L K  K  L  + V+ V VS RL  +PC++VTS++GWSA+ME+IM++Q L D+S  AYM  K+ +EINP HPI+KEL+ RV  D  D  V+    L++ TAL+ SGF+L+DP  +A RI+  +K  L++
Sbjct:  468 YVTGDSKKKLETSPFIEQARRRGFEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEETEEEKKQREEEKTAYERLCKAMKDVLG-DKVEKVVVSERLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMSKKTMEINPAHPIVKELKRRVEADENDKAVKDLVYLLFDTALLTSGFTLDDPTSYAERIHRMIKLGLSL 673          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 96/207 (46.38%), Postives = 145/207 (70.05%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            FITG +K+Q+  S F+ER+K + +EV++ T+P+DEY++Q+L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L S+ V+ V VSNRL ++PC +VTS++GWSANMERIM++Q L D +   YM GK+ LEINP HPI++ LR++   D  D  V+    L+++T+L+ SGFSL+ P+  ASRIY  +K  L I
Sbjct:  478 FITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFEGLCKLMKSILDSK-VEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVEALRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGI 683          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP83_DROME (Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 95/207 (45.89%), Postives = 145/207 (70.05%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            FITG +K+Q+  S F+ER+K + +EV++ T+P+DEY++Q+L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K  K  L ++ V+ V VSNRL ++PC +VTS++GWSANMERIM++Q L D +   YM GK+ LEINP HPI++ LR++   D  D  V+    L+++T+L+ SGFSL+ P+  ASRIY  +K  L I
Sbjct:  478 FITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDKAKFESLCKLMKSILDNK-VEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGI 683          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HSP83_DROAV (Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.434e-48
Identity = 94/207 (45.41%), Postives = 143/207 (69.08%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKES----FKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            FITG +K+Q+  S F+ER+K + +EV++ T+P+DEY++Q+L +Y+ K+  +V+KEGL+L +D  +K+ +E     F+ L K    A+    V+ V VSNRL ++PC +VTS++GWSANMERIM++Q L D +   YM GK+ LEINP HPI++ LR++   D  D  V+    L+++T+L+ SGFSL+ P+  ASRIY  +K  L I
Sbjct:  477 FITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDDAEKKKREEDKAKFESLCKLMN-AILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGI 682          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.434e-48
Identity = 94/207 (45.41%), Postives = 141/207 (68.12%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDK----ELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNI 616
            +ITG +KEQ+  S F+ER++K+ +EV++ T+P+DEY +Q L +++ K   +V+KEGL+L +D ++K    E K  F+ L K  K  L  + V++V +SNRL ++PC +VTS YGW+ANMERIM++Q L D S   YM  K+ LEINP HPI++ LR++   D  D  V+    L+++TAL+ SGFSL DP+  ++RIY  +K  L I
Sbjct:  485 YITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEIL-DKKVEEVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGI 690          
The following BLAST results are available for this feature:
BLAST of CX298061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
ENPL_CATRO1.314e-10281.39Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_ARATH3.956e-9984.88Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
ENPL_HORVU1.233e-9279.02Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HSP90_BRUPA5.793e-5049.52Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_ANOGA7.566e-5048.79Heat shock protein 83 OS=Anopheles gambiae GN=Hsp8... [more]
HSP85_TRYCR4.904e-4943.96Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HSP83_DROPS8.365e-4946.38Heat shock protein 83 OS=Drosophila pseudoobscura ... [more]
HSP83_DROME8.365e-4945.89Heat shock protein 83 OS=Drosophila melanogaster G... [more]
HSP83_DROAV2.434e-4845.41Heat shock protein 83 OS=Drosophila auraria GN=Hsp... [more]
HS90B_PONAB2.434e-4845.41Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06008B10SK RindPdig24 Citrus clementina cDNA clone C06008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298061 ID=CX298061; Name=CX298061; organism=Citrus clementina; type=EST; length=730bp
GAGGCTTTTCATTACAGGCGCCAACAAGGAACAGTTGGAAAAGTCTCCAT
TCCTGGAGAGGCTTAAGAAGAAGAACTATGAGGTGATTTTCTTCACTGAT
CCAGTTGATGAATACCTGATGCAATACCTGATGGATTATGAAGACAAAAA
GTTCCAAAATGTATCCAAAGAGGGTCTTAAACTTGGTAAAGACACTAAAG
ATAAGGAACTTAAGGAGTCATTCAAGGAGCTCACGAAATGGTGGAAGGGT
GCTCTTGCCAGCGAGAACGTGGATGATGTGAAAGTAAGCAACCGCTTGGA
TAACACCCCTTGCGTAGTTGTGACATCAAAGTATGGTTGGAGTGCGAATA
TGGAGAGGATCATGCAGTCTCAGACTCTCTCAGATGCTAGCAAGCAAGCA
TATATGCGGGGCAAGAGGGTGCTTGAAATCAATCCAAGGCATCCAATCAT
CAAAGAGCTCCGGGAGAGAGTCGTCAAGGACCCTGAGGATGCGGGTGTCC
AGCAAACAGCCCAACTCATTTACCAGACGGCACTCATGGAGAGTGGCTTT
TCGCTCAATGATCCCAAGGATTTTGCCTCCCGAATTTACAGCACGGTGAA
ATCTAGCCTTAACATTAGCCCTGATGCAGCTGTTGAGGAGGAAGATGATG
TAGAAGAGACTGATGCTGACACTGAAATGAAAGAATCTTCGGCTGCCAAG
AGGACGTGGATACAGAGTATTCTGGCAGGA
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