CX298099

Overview
NameCX298099
Unique NameCX298099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11580 contig Ccv1_Contig11580:600..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.345e-113
Identity = 195/216 (90.28%), Postives = 207/216 (95.83%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            QHPCNECKGTGETINDKDRC QCKGEKV+QEKKVLEVIVEKGMQN QKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSL E+LCGFQF++THLDGRQLLIKS PGEVVKPDQFKAINDEGMPMYQRPFM+GKLYIHF+V+FP+SL+P+QCK LE VLPPRTSVQL+DMELDECEETTLHDVNIEEEMRRK   AQEAYDED+
Sbjct:  186 QHPCNECKGTGETINDKDRCSQCKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEFPDSLNPEQCKALEGVLPPRTSVQLSDMELDECEETTLHDVNIEEEMRRKQ--AQEAYDEDE 399          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.066e-110
Identity = 189/217 (87.10%), Postives = 203/217 (93.55%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKS-TAAQEAYDEDD 648
            QHPCNECKGTGE I+DKDRCPQCKGEKV+Q+KKVLEV VEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLF EH+LSLTEALCGFQFV+THLD RQLLIKS PGEV+KPDQFK INDEGMPMYQRPFMRGKLYIHF+VDFP+SL+PDQCK LE+VLP R + +LTDME+DECEETT+HDVNIEEEMRRK    AQEAYDEDD
Sbjct:  188 QHPCNECKGTGEMISDKDRCPQCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDSLTPDQCKALESVLPSRNASRLTDMEIDECEETTMHDVNIEEEMRRKQHQQAQEAYDEDD 404          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.178e-109
Identity = 189/217 (87.10%), Postives = 202/217 (93.09%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKS-TAAQEAYDEDD 648
            QHPCN+CKGTGE INDKDRCP CKGEKV+QEKKVLEV VEKGMQNGQ+ITFPGEADEAPDTVTGDIVFVLQQKEHPKF+RKGDDLF +HTLSLTEALCGFQFV+THLDGRQLLIKS PGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI F VDFP+SL+PDQCK++E+VLP   S QLTDME+DECEETT+HDVNIEEEMRRK    AQEAYDEDD
Sbjct:  167 QHPCNDCKGTGEMINDKDRCPLCKGEKVVQEKKVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRKGDDLFYKHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDSLTPDQCKVIESVLPRSASSQLTDMEIDECEETTMHDVNIEEEMRRKQHQHAQEAYDEDD 383          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 3.429e-109
Identity = 187/217 (86.18%), Postives = 204/217 (94.01%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKST-AAQEAYDEDD 648
            QHPCNECKGTGETINDKDRCPQCKGEKV+QEKKVLEV+VEKGMQ+GQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKG+DLF EHTLSLTEALCGF+FV+THLDGRQLLIKS  GEVVKPDQFKAI DEGMP+YQRPFM+GK+YIHFTV+FP+SL+PDQ K LE +LPP+ S+ LT MELDECEETTLH+VNIEEEM+RK T A QEAYDEDD
Sbjct:  188 QHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVVVEKGMQHGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFRFVLTHLDGRQLLIKSNLGEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEFPDSLNPDQVKSLEAILPPKPSMSLTYMELDECEETTLHNVNIEEEMKRKQTQAQQEAYDEDD 404          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.032e-105
Identity = 180/216 (83.33%), Postives = 200/216 (92.59%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            QH CNECKGTGETIND+DRCPQCKG+KVI EKKVLEV VEKGMQ+ QKITF G+ADEAPDTVTGDIVFVLQQKEHPKFKRKG+DLFVEHTLSLTEALCGFQFV+THLDGR LLIKS PGEVVKPD +KAI+DEGMP+YQRPFM+GKLYIHFTV+FP+SLSPDQ K LE VLP  ++ QL+DME+DECEETTLHDVNIE+EMRRK+ A +EAYD+DD
Sbjct:  188 QHACNECKGTGETINDRDRCPQCKGDKVIPEKKVLEVNVEKGMQHSQKITFEGQADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDVNIEDEMRRKAQAQREAYDDDD 403          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 374.785 bits (961), Expect = 2.153e-103
Identity = 173/216 (80.09%), Postives = 199/216 (92.13%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            QH CN+CKGTGETIND+DRCPQCKGEKV+ EKKVLEV VEKGMQ+ QKITF G+ADEAPDTVTGDIVFV+QQKEHPKFKRKG+DLFVEHT+SLTEALCGFQFV+THLD RQLLIKS+PGEVVKPD +KAI+DEGMP+YQRPFM+GKLYIHFTV+FPESLSPDQ K +E VLP  T   ++DME+D+CEETTLHDVNIE+EM+RK+ A +EAYD+D+
Sbjct:  189 QHACNDCKGTGETINDRDRCPQCKGEKVVSEKKVLEVNVEKGMQHNQKITFSGQADEAPDTVTGDIVFVIQQKEHPKFKRKGEDLFVEHTISLTEALCGFQFVLTHLDKRQLLIKSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPESLSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVNIEDEMKRKAQAQREAYDDDE 404          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.668e-53
Identity = 99/197 (50.25%), Postives = 138/197 (70.05%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 570
            Q  C++C G GE IN+KDRC +C+G+KVI+E K+LEV V+KGM++GQ+ITF GEAD+AP    GDIV +LQ+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  183 QSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGETEEVELQEFDST 379          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.485e-53
Identity = 104/218 (47.71%), Postives = 146/218 (66.97%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR      EAY++D+
Sbjct:  174 QSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRRHYNG--EAYEDDE 385          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.485e-53
Identity = 104/218 (47.71%), Postives = 146/218 (66.97%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR      EAY++D+
Sbjct:  173 QSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRRHYNG--EAYEDDE 384          
BLAST of CX298099 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.485e-53
Identity = 104/218 (47.71%), Postives = 146/218 (66.97%), Query Frame = 1
Query:    1 QHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKSTAAQEAYDEDD 648
            Q  C EC+G GE I+ KDRC  C G K+++EKK+LEV ++KGM++GQKITF GE D+ P    GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR      EAY++D+
Sbjct:  174 QSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRRHYNG--EAYEDDE 385          
The following BLAST results are available for this feature:
BLAST of CX298099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
DNJH_CUCSA1.345e-11390.28DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH2_ALLPO1.066e-11087.10DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNJH1_ALLPO1.178e-10987.10DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNJH_ATRNU3.429e-10986.18DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNAJ3_ARATH1.032e-10583.33Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH2.153e-10380.09Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJA2_HUMAN2.668e-5350.25DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNJA1_RAT3.485e-5347.71DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_PONAB3.485e-5347.71DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_MOUSE3.485e-5347.71DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC06008E12SK RindPdig24 Citrus clementina cDNA clone C06008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298099 ID=CX298099; Name=CX298099; organism=Citrus clementina; type=EST; length=648bp
CAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAATCAATGACAA
GGATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGGAGAAAAAAG
TCTTGGAGGTTATTGTTGAGAAGGGGATGCAAAATGGACAGAAGATTACG
TTCCCTGGAGAAGCTGATGAAGCGCCCGACACTGTCACAGGTGACATTGT
ATTTGTTCTACAACAGAAAGAGCACCCGAAATTTAAGCGAAAGGGTGATG
ACCTATTTGTTGAGCACACCCTGTCACTGACAGAAGCTCTCTGTGGCTTT
CAATTTGTAATAACTCATTTGGATGGCCGGCAACTCCTCATCAAATCCCA
GCCTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCCATAAATGATGAAG
GAATGCCTATGTATCAGAGGCCATTTATGAGGGGCAAACTGTACATTCAT
TTCACTGTTGACTTCCCTGAGTCACTGAGCCCAGACCAGTGCAAGATGCT
GGAGACCGTACTACCTCCAAGGACCTCAGTCCAGCTCACCGATATGGAAC
TGGATGAGTGTGAAGAAACAACCCTGCATGATGTGAACATTGAGGAGGAA
ATGCGAAGGAAAAGCACAGCAGCTCAGGAGGCATACGATGAAGATGAC
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