CX298123

Overview
NameCX298123
Unique NameCX298123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig740 contig Ccv1_Contig740:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_ORYSJ (Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.209e-77
Identity = 140/152 (92.11%), Postives = 146/152 (96.05%), Query Frame = 3 
Query:   75 AGEE---DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            AGE+    GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVF++P+VLRE RRII ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLI+LHFKIKPI
Sbjct:    7 AGEDVPGGGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRIIQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIKPI 158
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_EUPLA (Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 3 
Query:   84 EDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            ED EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVL+ECRRII+ESEIMKEDD NWP PDRVGRQELEIVMGNE+ISFTTSKIGSLVDVQ SKDPEGLRIFYYLV DLKCFVFSLISLHFKIKPI
Sbjct:    4 EDNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLKECRRIIAESEIMKEDDANWPGPDRVGRQELEIVMGNEYISFTTSKIGSLVDVQRSKDPEGLRIFYYLVHDLKCFVFSLISLHFKIKPI 149
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_ARATH (Protein mago nashi homolog OS=Arabidopsis thaliana GN=At1g02140 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.032e-75
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 3 
Query:   72 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            MA EE  EFYLRYYVGHKGKFGHEFLEFEFR DGKLRYANNSNYKNDT+IRKEVFLTPAVL+EC+RI+SESEI+KEDDNNWPEPDRVG+QELEIV+GNEHISF TSKIGSLVD QSS DPEGLRIFYYLVQDLKC VFSLISLHFKIKPI
Sbjct:    1 MAAEEATEFYLRYYVGHKGKFGHEFLEFEFREDGKLRYANNSNYKNDTIIRKEVFLTPAVLKECKRIVSESEILKEDDNNWPEPDRVGKQELEIVLGNEHISFATSKIGSLVDCQSSNDPEGLRIFYYLVQDLKCLVFSLISLHFKIKPI 150
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_RAT (Protein mago nashi homolog OS=Rattus norvegicus GN=Magoh PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:   87 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_MOUSE (Protein mago nashi homolog OS=Mus musculus GN=Magoh PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:   87 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_HUMAN (Protein mago nashi homolog OS=Homo sapiens GN=MAGOH PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:   87 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_BOVIN (Protein mago nashi homolog OS=Bos taurus GN=MAGOH PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:   87 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_SALSA (Protein mago nashi homolog OS=Salmo salar GN=magoh PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.652e-65
Identity = 117/143 (81.82%), Postives = 128/143 (89.51%), Query Frame = 3 
Query:   93 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 147
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_DANRE (Protein mago nashi homolog OS=Danio rerio GN=magoh PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.652e-65
Identity = 117/143 (81.82%), Postives = 128/143 (89.51%), Query Frame = 3 
Query:   93 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 147
[Close]
BLAST of CX298123 vs. ExPASy Swiss-Prot
Match: MGN_CHICK (Protein mago nashi homolog OS=Gallus gallus GN=MAGOH PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.652e-65
Identity = 117/143 (81.82%), Postives = 128/143 (89.51%), Query Frame = 3 
Query:   93 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 521
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:    4 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146
The following BLAST results are available for this feature:
BLAST of CX298123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MGN_ORYSJ3.209e-7792.11Protein mago nashi homolog OS=Oryza sativa subsp. ... [more]
MGN_EUPLA1.219e-7694.52Protein mago nashi homolog OS=Euphorbia lagascae P... [more]
MGN_ARATH1.032e-7590.00Protein mago nashi homolog OS=Arabidopsis thaliana... [more]
MGN_RAT9.683e-6680.69Protein mago nashi homolog OS=Rattus norvegicus GN... [more]
MGN_MOUSE9.683e-6680.69Protein mago nashi homolog OS=Mus musculus GN=Mago... [more]
MGN_HUMAN9.683e-6680.69Protein mago nashi homolog OS=Homo sapiens GN=MAGO... [more]
MGN_BOVIN9.683e-6680.69Protein mago nashi homolog OS=Bos taurus GN=MAGOH ... [more]
MGN_SALSA1.652e-6581.82Protein mago nashi homolog OS=Salmo salar GN=magoh... [more]
MGN_DANRE1.652e-6581.82Protein mago nashi homolog OS=Danio rerio GN=magoh... [more]
MGN_CHICK1.652e-6581.82Protein mago nashi homolog OS=Gallus gallus GN=MAG... [more]

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Properties
Property NameValue
Genbank descriptionC06008G12SK RindPdig24 Citrus clementina cDNA clone C06008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298123 ID=CX298123; Name=CX298123; organism=Citrus clementina; type=EST; length=726bp
GATTCGGCCGAGGGGAGGGCATTGGATTTTATCTGTCCTCTCCCCTCTGA
TTGAAAGTCGAAACAGAAACAATGGCCGGAGAAGAAGATGGAGAGTTTTA
TCTTCGTTACTACGTAGGGCACAAGGGCAAATTCGGTCACGAGTTCTTGG
AGTTCGAGTTTCGGCCAGATGGCAAGCTCCGATACGCTAATAATTCCAAC
TACAAAAACGATACTATGATTCGCAAAGAGGTCTTCCTCACCCCCGCCGT
CCTCCGCGAATGCCGCCGCATCATTTCCGAGAGCGAGATCATGAAGGAAG
ATGATAACAACTGGCCGGAGCCTGACCGTGTTGGACGGCAGGAGCTGGAG
ATTGTAATGGGAAATGAACATATCTCCTTCACTACTTCAAAAATTGGATC
ACTTGTTGACGTCCAGAGTAGTAAGGATCCGGAAGGCCTTCGTATATTCT
ATTATCTTGTTCAGGACTTGAAGTGCTTTGTGTTCTCTCTCATCTCACTT
CATTTCAAGATCAAACCTATATAAACAGCAACATGGTTTCTGCCTTACAA
TATCTGTTCGGGGGTCTTGCTTTTGTGTTTGTAACAGCTGCTTCATTAGT
ATGTGGACTTTGTAGTTTTACAACTTTTTGCCTTTGTTATTATCTGGGTT
TGTGTGTGGCTTATGTAAGGATCTGTGGATTTGGAGCTGAGTAGAAATGT
CCCTGTCTGTATGGCTGGCTTCGGGC
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