CX298307

Overview
NameCX298307
Unique NameCX298307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298307_ssr690 microsatellite CX298307_ssr690:690..699. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 5.930e-80
Identity = 148/209 (70.81%), Postives = 181/209 (86.60%), Query Frame = 1
Query:    1 LGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 627
            LGRLAVQL +GG GV++++V Y S+R  DDLDTRLLRAMITKG+IEPISD +VNLVNAD+ AKQ+GLR++EER+++D SPE P++ IQVQI NVES FA A+S++G+I +EG+VK GVPHLT VGSF VDVSLEG++ILCRQVDQPGMIG VG+ILG +NVNV+FMSVGR   RK A+MAIGVDE+P  +TL++IG V AIEEFVFLKL
Sbjct:  416 LGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624          
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 59/214 (27.57%), Postives = 103/214 (48.13%), Query Frame = 1
Query:    1 LGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAI-----SESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 627
            LG + +Q++ G   V  V++ Y+   A +  D  L++    KGL+ PI    +NLVNA   AK R + + E                    +  E K+ +AI     S+  +  + G + +  P + +V  +EV    EG + + + +D+PG IG V   LG   +N++ M VGR  P   +VM + +D    +E ++KI ++P I++   + L
Sbjct:  334 LGNIVMQVLDGS--VNRVELIYSGELAKEKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVES-------------------STSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRPGTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKDVAVINL 524          
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 60/210 (28.57%), Postives = 104/210 (49.52%), Query Frame = 1
Query:    1 LGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 627
            +G +  Q + G   ++ + V+Y    A    D  L R M+ + ++ PI    VNL+NA   AK+RG+ +TE R        S +              A+A S+ G   VE   +K+  P +  +  + VDV  EG++I+ R  D PG IG +G+ LG   +N++ M VGR      AVM + VD+    E ++++  +  +++ V +++
Sbjct:  335 MGAIIAQALPGN--IEKLDVTYCGELAEMQFDI-LTRTML-QAILNPILTEPVNLINAPSIAKKRGIMVTEARRSESDGYRSII-------------IATAESDRGGFSVEATHIKE--PTIIGINGYRVDVKPEGTMIIARYRDLPGTIGAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNVDDAVAIEI 525          
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.819e-12
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 1
Query:  124 KGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANV--ESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 627
            KGL+       VN VNA   AK+RG+R+ E +   D S       + ++      E     A+  +GEI++           T V  F ++V     ++     D PG+IG +GS+LGS NVN++ M VGR   R  A+MA+ +D+      L +I  V  I +   +KL
Sbjct:  399 KGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHLKATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPGIIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKVAGIRDAYTVKL 554          
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.103e-12
Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:   34 GSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAV--MAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 627
            G  ++ VKV+ +   A  +  T  +   + KGL EPI    +NLV+A   A +RG+ + E ++      ES LE + V+            S   E+ + G        + K+  + V+   +G  I+    D+PG+IG VG++ G  N+N++ M VGR   +   +  M + VD+ P  E L+++  +  I +  +++L
Sbjct:  343 GGAIRKVKVTCSGKLATKN--TEFVTRALLKGLFEPILSNEINLVSAKPVAVERGITIEESKVESVEHYESLLE-VWVE------------SNGKEMYLAGTCFGNEYRILKIDVYNVNFVPKGHYIISLHEDKPGVIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKLDGIIDATYVEL 527          
BLAST of CX298307 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 54/190 (28.42%), Postives = 87/190 (45.79%), Query Frame = 1
Query:   43 VKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKF---ASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAI 603
            V+ V + Y  + A   L+T  +   +  G ++P  D  VN VNA   AK+RG+  +E+   +  S       I V++    S F   A+ I   GE  VE            +  F +D    G ++  +  D  G+IG VG ILG  ++N++ M VGR      A+M +  D     + +K++ +VP I
Sbjct:  344 VQDVAIQYEGTIAK--LETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEK---ISSSESGYDNCISVKVTGDRSTFTVTATYIPHFGERIVE------------INGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDI 516          
The following BLAST results are available for this feature:
BLAST of CX298307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SERA_ARATH5.930e-8070.81D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA1.878e-1727.57D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH3.916e-1528.57D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_SYNY31.819e-1231.18D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_ARCFU3.103e-1227.00D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_BACSU4.052e-1228.42D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
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Properties
Property NameValue
Genbank descriptionC06010G09SK RindPdig24 Citrus clementina cDNA clone C06010G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298307 ID=CX298307; Name=CX298307; organism=Citrus clementina; type=EST; length=776bp
CTTGGTCGGCTTGCTGTCCAACTGGTAGCAGGAGGAAGTGGTGTGAAAAC
CGTGAAAGTGTCGTATGCTTCTTCGAGGGCCCCAGATGACCTTGACACAA
GATTGCTCCGTGCCATGATCACCAAGGGTCTGATTGAGCCCATATCCGAT
GTTTTTGTGAACTTAGTTAATGCTGATTACACAGCCAAACAGAGAGGCCT
CCGGTTAACTGAAGAACGAATTCTCCTAGATGGTTCACCTGAGAGTCCAC
TCGAATTCATCCAGGTTCAGATTGCCAATGTGGAATCAAAATTTGCCAGT
GCCATATCCGAGTCTGGGGAGATCAAGGTCGAGGGACGAGTGAAGGATGG
AGTTCCACATTTGACAAAGGTAGGATCTTTTGAGGTGGATGTGAGTTTGG
AAGGCAGCATCATACTCTGCAGACAGGTTGATCAGCCGGGTATGATCGGC
ACAGTGGGAAGTATTTTGGGAAGTGAGAATGTGAATGTCAGTTTCATGAG
TGTTGGAAGGGTTGCTCCCCGGAAGCATGCAGTGATGGCAATTGGAGTGG
ATGAACAACCCCGCAAAGAAACTTTGAAAAAGATTGGCGATGTTCCCGCC
ATAGAAGAGTTTGTTTTCCTTAAGTTGTAATGTGTCTCAGCGTCACCACC
ACATCCAAATATTTTACGCTATTGTTTTTTCCGTCCTCGGAGAGAGAGAA
ATTGGTGTCTTTACCGCATTGTAGTGCACGATTCTTAGGACTTTCATTTT
TACTGTCTTTGTTAGGCTGGCAGTTT
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