CX298310

Overview
NameCX298310
Unique NameCX298310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12558 contig Ccv1_Contig12558:158..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.070e-114
Identity = 204/238 (85.71%), Postives = 215/238 (90.34%), Query Frame = 1
Query:    1 EAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGI-----SYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYL 699
            E   V RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPE DMI LIHHAINSGITLLDTSD+YGPHTNEILLGKALKGG RERV LATKFGI       A+GKR + GDPAY RAACEASLKRLDIDCIDLYYQHR+DTRVPIE+T+GELKKLVEEGK+KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVE EI+PTCRELGIGIVAYSPLGRGF SSGPKL+E  S ED+R+YL
Sbjct:    4 EGTKVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGPKLLEDMSNEDYRKYL 241          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.546e-113
Identity = 194/230 (84.35%), Postives = 216/230 (93.91%), Query Frame = 1
Query:   10 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYL 699
            +V RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPES+MI LIHHA+++G+T LDTSD+YGPHTNE+LLGKAL+GG+RE+VELATKFG+S+ADGKREI GDPAY R ACE S KRL +DCIDLYYQHRID RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD E +I+PTCRELGIGIVAYSPLGRGFFSSG KLV+S S++DFR+++
Sbjct:    7 SVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCRELGIGIVAYSPLGRGFFSSGAKLVDSLSEQDFRKHM 236          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 106/221 (47.96%), Postives = 140/221 (63.35%), Query Frame = 1
Query:   49 VSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISY--ADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE---IVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQ 693
            V A G GCMG+ A YGP   E++  A++ HA + G T  D+SD+YG   NE  +G+  K  G R+ + LATKFG       G+  +  +P Y   A + SLKRL IDCIDLYY HR     PIE  +G LKK VE GKI+YIGLSE SA+TIRRA AV+P++AVQ+E+S +S ++E     ++  CRE  I IV Y+PLGRGF +   K  + F + DFR+
Sbjct:   13 VPAIGFGCMGLHAMYGPSSEEANQ-AVLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLTGAYKSPDDFPEGDFRR 232          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: PLR1_SCHPO (Pyridoxal reductase OS=Schizosaccharomyces pombe GN=plr1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 85/233 (36.48%), Postives = 127/233 (54.51%), Query Frame = 1
Query:   40 GLEVSAQGLGCMGMSAFYGPPK--PESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKGGMRE--RVELATKFGISYADGKREIRGDPAYARAACEASLKRL-DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYSPLGRGFFSSGPKLVE---SFSKE-DFRQYL 699
            G +V   G G MG++     PK  P+ +   ++++A++ G    D  + YG   P +N  LL +  +       +V L+ K G+ +     +  G+P +   + E  +  L     +DL+   R+D  VPIE T+  LK  V+ GKI  +GLSE SA TI+RAHAV PI AV++E+SL+SRD+E   I+  CR+L I I+AYSP  RG  +   K VE    F+K   F +YL
Sbjct:    6 GFKVGPIGFGLMGLT---WKPKQTPDEEAFEVMNYALSQGSNYWDAGEFYGVDPPTSNLDLLARYFEKYPENANKVFLSVKGGLDFKTLVPD--GNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIETNGIMDICRKLSIPIIAYSPFCRGLLTGRIKTVEDLKEFAKSFPFLEYL 233          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  127 LIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQ 693
            L+  A++ G+  +DT+ IYG   +E L+G+ ++  G+R  + +ATK      DG  E+     + R+  E SLKRL  D IDLYY H  D + P+    G LK+L +EGKIK IG S      ++  +A   +   Q E+SL  RD E E++P C + GI  + Y PL  G  +   K  +    +DFR+
Sbjct:   41 LVRTALDGGVNFIDTAFIYGLGRSEELIGEVVQERGVRNELIIATKGAHKEVDGSIELDNSREFLRSEVEKSLKRLKTDYIDLYYVHFPDGKTPLAEVAGTLKELKDEGKIKAIGASNLDYQQLQDFNADGYLEVFQAEYSLIQRDAEKELLPYCEKQGISFIPYFPLASGLLTG--KFTQDTVFDDFRK 228          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 74/224 (33.04%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   28 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQY 696
            +   G+E S  GLG   +         E   I  I  A++ GITL+DT+  YG   +E ++GKA+K  G R++V LATK  + + + +     + A      E SLKRL  D IDLY  H  D  VPIE T   +K+L + GKI+ IG+S  S   +    AV P+  +Q  ++L+ R++E  ++P  ++  I  + Y  L RG  +       +F  +D R +
Sbjct:    6 IADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGKMTEEYTFEGDDLRNH 229          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: YQKF_BACSU (Uncharacterized oxidoreductase yqkF OS=Bacillus subtilis GN=yqkF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 74/232 (31.90%), Postives = 119/232 (51.29%), Query Frame = 1
Query:   13 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDP--AYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGP--KLVESFSKEDFRQY 696
            +++ KLG+  L++S  GLGCM +         ++  ++++  AI  GI  LDT+D+Y    NE ++G A++   R  + LATK G  + DG      DP  AY + A + SL RL  D IDLY  H       I+ TI   ++L +EG I+Y G+S    + I+       I ++ +++SL+ R  E E +P   E  I +VA  P+ +G  +  P  +  ES  +  +  Y
Sbjct:    1 MRKRKLGTSDLDISEVGLGCMSLGT------EKNKALSILDEAIELGINYLDTADLYDRGRNEEIVGDAIQN-RRHDIILATKAGNRWDDGSEGWYWDPSKAYIKEAVKKSLTRLKTDYIDLYQLHGGTIEDNIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYVKKSNIVSIMMQFSLFDRRPE-EWLPLLEEHQISVVARGPVAKGLLTEKPLDQASESMKQNGYLSY 224          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 72/228 (31.58%), Postives = 113/228 (49.56%), Query Frame = 1
Query:   13 VKRIKLGSQGLEVSAQGLG--CMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFR 690
            +K+ KLG   L+V   GLG   +G    Y P   E     L+  AI +G+T+LDT+ IYG   +E L+G+ L+   RE V +ATK               P + + + + SLKRL+ D IDL+Y H  D   P +  +  L ++ + GKI+ IG+S  S   ++ A+    +  +Q E++L +R+ E    P  +E  I  + Y PL  G  +       +F + D R
Sbjct:    1 MKKAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFNREDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLR 227          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 82/230 (35.65%), Postives = 114/230 (49.57%), Query Frame = 1
Query:   28 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTN----EILLGK--ALKGGMRERVELATKFGISYAD---GKREIRGDPAYA-RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA------VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVES 669
            LG  GL VS   LG M     +G    E     ++  A+++GI   DT++IYG   N    E ++GK  A  G  RE+V LATK     +D   G  ++RG   Y  R   E SLKRL  D I+LY  H ID R P +      +  V  GK+ YIG S  +   + +A A         +   Q ++SL  R  E E++P  R+LG+G+VA+SPL  G    G K ++S
Sbjct:    6 LGRTGLRVSRLCLGTMN----FGVDTDEKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWFAQGGQRREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDRRTPWDEIWEAFETQVRSGKVDYIGSSNFAGWHLVKAQAEAEKRRFMGLVTEQHKYSLLERTAEMEVLPAARDLGLGVVAWSPLAGGLL--GGKALKS 229          
BLAST of CX298310 vs. ExPASy Swiss-Prot
Match: PLR2_SCHPO (Probable pyridoxal reductase 2 OS=Schizosaccharomyces pombe GN=SPCC1281.04 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 76/217 (35.02%), Postives = 117/217 (53.92%), Query Frame = 1
Query:   40 GLEVSAQGLGCMGMSAFYGPPK-PESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKGGMR--ERVELATKFGISYADGKREIRGDPAYARAACEASLKRL-DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 666
            G +V   GLG MG++  + P + P      L+++A++ G    +  + YG   P  N  LL    +   +  ++V L+ K G  +        GDP     + + +L RL     +DL+   R+D +VPIE T+  LK  V+ G+I  +GLSEASA +I+RA A+ PI AV+ E+SL+SRD+E   I+ TC +L I I+AY+P   G  +   K  E
Sbjct:    6 GFKVGPIGLGLMGLT--WRPKQTPIKQAFELMNYALSQGSNYWNAGEFYGINPPTANLDLLADYFEKYPKNADKVFLSVKGGTDFKT--LAPHGDPESVTKSVKNALTRLRGKKKLDLFQCARVDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIEKNGILDTCTQLSIPIIAYAPFCHGLLTGRVKTAE 218          
The following BLAST results are available for this feature:
BLAST of CX298310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
A115_TOBAC1.070e-11485.71Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.546e-11384.35IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
YAKC_SCHPO1.128e-4747.96Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
PLR1_SCHPO5.449e-2636.48Pyridoxal reductase OS=Schizosaccharomyces pombe G... [more]
YCCK_BACSU2.071e-2535.79Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
GS69_BACSU7.869e-2533.04General stress protein 69 OS=Bacillus subtilis GN=... [more]
YQKF_BACSU4.318e-2331.90Uncharacterized oxidoreductase yqkF OS=Bacillus su... [more]
IOLS_BACSU1.256e-2231.58Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
YRPG_BACSU2.799e-2235.65Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
PLR2_SCHPO2.799e-2235.02Probable pyridoxal reductase 2 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC06010G12SK RindPdig24 Citrus clementina cDNA clone C06010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298310 ID=CX298310; Name=CX298310; organism=Citrus clementina; type=EST; length=700bp
GAGGCGGGGGCAGTGAAGAGAATCAAGCTTGGTTCACAAGGTCTAGAGGT
TTCAGCACAAGGCTTAGGATGCATGGGCATGTCCGCCTTCTACGGGCCCC
CGAAGCCAGAATCCGACATGATCGCCTTGATCCACCATGCCATTAACAGT
GGCATCACTCTACTTGACACCTCCGATATTTACGGGCCCCACACCAATGA
AATCCTTCTGGGAAAGGCTTTGAAGGGAGGAATGAGGGAAAGAGTTGAAT
TGGCTACTAAATTTGGTATCAGCTATGCGGATGGTAAAAGGGAAATTCGC
GGTGACCCGGCTTATGCGAGAGCTGCATGTGAGGCCAGCTTGAAGCGTCT
GGATATTGATTGTATTGATCTTTATTACCAACATCGCATTGATACACGAG
TTCCCATTGAAGTCACGATTGGAGAACTCAAGAAACTAGTTGAAGAGGGT
AAGATAAAGTATATAGGTCTGTCCGAGGCTTCTGCCTCAACAATTAGACG
AGCTCATGCTGTCCATCCAATAACAGCTGTGCAGTTGGAATGGTCCTTGT
GGTCACGAGATGTGGAGGCAGAGATTGTTCCTACTTGCAGGGAACTTGGC
ATTGGAATTGTTGCATACAGTCCTCTAGGACGAGGATTTTTTTCCTCAGG
GCCTAAGTTGGTTGAAAGCTTTTCAAAGGAAGATTTTAGACAGTATCTAC
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