CX298313

Overview
NameCX298313
Unique NameCX298313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig746 contig Ccv1_Contig746:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.295e-46
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = -1
Query:  196 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGE 528
            MV +KKTKKTHESINNRL  VMKSGKYT GYKTV +  RS KGKLI ++NNCPPLRKSEIEYYAMLAKVGV   NGNNVDLGTACGKY+RV CLSI+DPGD DIIK+LPG+
Sbjct:    1 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.396e-46
Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = -1
Query:  193 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGEH 528
            MV +KKTKKTHESIN+RL  VMKSGK+T GYKTV    RS KGKLI ++NNCPPLRKSEIEYYAMLAKVGV   NGNNVDLGTACGKYFRV CLSIID GD DIIKS+PG+H
Sbjct:    1 MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.068e-44
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = -1
Query:  196 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGE 528
            MV  KKTKK+HE IN+RL  VMKSGKYT GYK+V +  R  KGKLI +S NCPPLR+SEIEYYAMLAKVGV   NGNNVDLGTACGKYFRVSCLSI+DPGD DIIKS+PG+
Sbjct:    1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.068e-44
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = -1
Query:  196 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGE 528
            MV +KKTKK+HE IN+RL  VMKSGKYT GYK+V +  RS KGKLI +S+NCPPLR+SEIEYYAMLAKVGV   N NNVDLGTACGKYFRVSCLSI+DPGD DIIKSLPG+
Sbjct:    1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.701e-44
Identity = 85/111 (76.58%), Postives = 95/111 (85.59%), Query Frame = -1
Query:  196 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGE 528
            MV  KK KK+HE IN+RL  VMKSGKYT GYK+V +  RS KGKLI +S+NCPPLR+SEIEYYAMLAKVGV   NGNNVDLGTACGKYFRVSCLSI+DPGD DIIK+LPG+
Sbjct:    1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.255e-41
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  196 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLPGE 528
            MV +KKTKK+ ++INN+L  VMKSGKYT GYKTV R  R+ K KL+ ++NNCPPLRKSEIEYYAMLAKV V   +GNNVDLGTACGKYFRV CLSIIDPGD DIIK+ PGE
Sbjct:    1 MVATKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.271e-40
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = -1
Query:  208 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKS 528
            MV +KKTKK+ ++INN+L  VMKSGKYT GYKTV R  R+ K KL+ +SNNCPPLRKSEIEYYAMLAKV V   +GNNVDLGTACGKYFRV CLSIIDPGD DIIK+
Sbjct:    1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.934e-38
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = -1
Query:  208 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKS 528
            M P+KK KK+ E+INN+L  VMKSGKYT GYKTV +  RS  GKLI L+NNCPPLRKSEIE YAMLAK+ V   +GNNVDLGTACGKY+RV CLSI+DPGD DII +
Sbjct:    1 MAPTKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  202 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLP 528
            MV +KKTKK+ ESIN+RL  VMKSGKY  GYK   +  R  K KL+ L+NNCP LRKSEIEYYAMLAK GV   +GNN++LGTACGKY+RV  L+IIDPGD DII+S+P
Sbjct:    1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CX298313 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.707e-36
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  202 MVPSKKTKKTHESINNRLVFVMKSGKYTFGYKTVFRFFRSFKGKLIFLSNNCPPLRKSEIEYYAMLAKVGVPPSNGNNVDLGTACGKYFRVSCLSIIDPGDFDIIKSLP 528
            MV +KKTKK+ ESIN+RL  VMKSGKY  GYK   +  R  K KL+ L+NNCP LRKSEIEYYAMLAK GV   +GNN++LGTACGKY+RV  L+IIDPGD DII+S+P
Sbjct:    1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of CX298313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL30_LUPLU1.295e-4680.1860S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES8.396e-4679.4660S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL302_ARATH2.068e-4476.5860S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL301_ARATH2.068e-4477.48Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH2.701e-4476.5860S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE1.255e-4173.8760S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_ORYSJ5.271e-4074.7760S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_WHEAT4.934e-3871.0360S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT2.707e-3666.9760S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA2.707e-3666.9760S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06010H03SK RindPdig24 Citrus clementina cDNA clone C06010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298313 ID=CX298313; Name=CX298313; organism=Citrus clementina; type=EST; length=621bp
TAGTCTCGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTCAGCACGACATTCCAAATTGGACTATATAAAAAAGTGTATCTCGAGG
ATGTTCAAAAAAAAATTTCAATTGAAAAACAGCATTCCACAATTAAACAA
TCAGAACACTAAGATGCAGGTTTGAACTCTGAATCAGGCTCAGTGCTCTC
CCGGAAGTGACTTGATGATATCAAAATCCCCTGGATCGATAATGCTCAAG
CAAGACACACGGAAGTACTTTCCACATGCTGTTCCCAAATCGACATTGTT
TCCATTGGAGGGGGGTACACCAACTTTAGCAAGCATAGCATAGTACTCAA
TCTCTGATTTTCTCAACGGGGGGCAATTATTTGACAAAAAAATCAACTTT
CCCTTAAAGCTTCTGAAAAATCGAAAAACAGTTTTGTAACCAAAAGTGTA
TTTGCCGCTCTTCATCACAAAAACAAGCCTGTTGTTGATGCTCTCATGAG
TCTTCTTCGTCTTCTTGCTTGGGACCATTTTCAACTGTTTGGTTGCCTGG
AAAATCAGATGACACAGAAAATTTAGAGGCAATAAAAAAACATGAAATGG
GCTTTAGGGTTTGGTTTAGAG
back to top