CX298415

Overview
NameCX298415
Unique NameCX298415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 72/95 (75.79%), Postives = 88/95 (92.63%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            LAEKGV+YEYKE++L N+SPLLL+MNP+HKKIPVLIHNGK +CES+IIVQYIDEVW DK+PL+P DPY+R+QARFWVD+IDKK+YDT +K W +K
Sbjct:   23 LAEKGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSK 117          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAP-LLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            LAEK +KYEYK++DL NKSPLLL+MNP+HKKIPVLIHNGK +CES I V+YI+EVWKDKAP LLP DPY RAQARFW D+IDKK+YD  RK WATK
Sbjct:   24 LAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATK 119          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAP-LLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            LAEK +KYEYKE+DL NKSPLLL+MNP+HKKIPVLIHNGK +CES I V+YI+EVWKDKAP LLP DPY RAQARFW D+IDKK+YD  RK W TK
Sbjct:   24 LAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTK 119          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            LA KG+KYE KE++L +KSPLLL MNPVHKKIP+LIHN K++CES  I++YIDEVW DK PLLP DPY+R+QARFW D+IDKK+Y T R+ W+ K
Sbjct:   24 LALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGK 118          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            LA KG+KYE KE++L +KSPLLL MNPVHKKIP+LIHNGK +CES  I++YIDEVW +K PLLP DPYQR+QARFW ++ID K+Y T R+ W+ K
Sbjct:   24 LALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGK 118          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 3
Query:  387 KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKK 626
            KGVKYE+ E+DL NKSPLLL+ NP+HKKIPVLIHNGK +CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K
Sbjct:   25 KGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK 103          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  357 SPVPCK---PLAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKMYDTSRKT 650
            SP  C+    L  KGV+Y++ E++L NKS LLL+ NPVHKK+PV +HN + + ES +IV+YIDE WK+  P+LP DPYQRA ARFW  FID K+     K+
Sbjct:   16 SPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN-PILPSDPYQRALARFWSKFIDDKIVGAVSKS 115          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.948e-23
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  378 LAEKGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLP-------YDPYQRAQARFWVDFIDKKMYDTSRKTWATK 662
            +AEKG+++EY+E+DL NKS LLLR NPVH+KIPVL+H G+ V ES +I+QY+D+ +     LLP          Y RA ARFW D++D+K+YD   + W  K
Sbjct:   25 MAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLK 126          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 45/81 (55.56%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  387 KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKM 629
            KG+ YEY E+ L NKSPLLL +NP+HKK+PVL+HNGK++ ES +I++YIDE W    P+LP DPY+R++ARF+   +D+++
Sbjct:   28 KGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN-PILPQDPYERSKARFFAKLVDEQI 107          
BLAST of CX298415 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  387 KGVKYEYKEQDLFNKSPLLLRMNPVHKKIPVLIHNGKSVCESSIIVQYIDEVWKDKAPLLPYDPYQRAQARFWVDFIDKKM 629
            KGVKYEY E+D  NKS LLL+ NP+HKK+PVLIHNGK + ES +I++YIDE ++  + +LP DPY RA ARFW  F+D K+
Sbjct:   25 KGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV 104          
The following BLAST results are available for this feature:
BLAST of CX298415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX3_SOYBN1.556e-4075.79Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXC_TOBAC6.537e-3977.08Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC8.537e-3977.08Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_TOBAC3.357e-3568.42Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL2.176e-3467.37Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTX1_SOLTU4.548e-2462.50Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX6_SOYBN1.013e-2353.47Probable glutathione S-transferase OS=Glycine max ... [more]
GSTU1_ORYSJ2.948e-2350.00Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTXA_ARATH8.577e-2355.56Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_TOBAC1.911e-2260.49Probable glutathione S-transferase OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC06012A01SK RindPdig24 Citrus clementina cDNA clone C06012A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298415 ID=CX298415; Name=CX298415; organism=Citrus clementina; type=EST; length=663bp
AGTTTTTTTTTTTTTTTTTTTCAACAACACTCTTATCAATTTGATTCCAG
TGAAAAAAGATTGAAAATTTCTCAAATTCATATACAAAAAATTCTAACAT
CAAGCAGAAAGAAGTAAATCAACCATTTCACTTTCAGCATGGAAGCATTT
AATTTTTATTATAGAGAAGGAAACAAAGTTTCAGCCCTGCTTTCAAAAAC
CCCATCAAAGCTCAAGACCTTTCCGCACACTTGGCTTCCCACCACTCCAT
AAACTTTGACTGTGCAGCCAAGGTGTCCATCCTGTAAAGTTGCAGATAGT
GATTGGCAAATTCCTGTCCAAAAGTCCACCCGAAAACAGCTCCTGCTGCT
AAAGACAGCCCAGTACCATGTAAACCTCTGGCAGAGAAAGGCGTCAAGTA
TGAGTACAAAGAACAGGACTTGTTCAACAAGAGCCCGCTGCTTCTGCGGA
TGAATCCCGTCCACAAGAAGATCCCGGTTCTTATCCATAATGGCAAATCG
GTCTGTGAGTCATCCATCATTGTTCAGTACATTGATGAAGTCTGGAAGGA
CAAGGCTCCATTGCTTCCCTACGATCCTTACCAAAGAGCTCAAGCGAGGT
TCTGGGTCGATTTTATTGACAAGAAGATGTACGATACTTCGAGGAAGACA
TGGGCCACAAAGG
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