CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:210..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.959e-94
Identity = 165/223 (73.99%), Postives = 186/223 (83.41%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            EF+DTVERLTK HYR+C+EQRFKELVAS+ LE ++TEVNDMDWESTFY+RHLP+S I+EVPDL+++YR VM                          GYLKK F+G NGPTFGTKVSNYPPCP P+LIKGLRAHTDAGG+ILLFQDDKVSGLQLLKDGQWIDVPP+RHSIV+NLGDQ+EVITNGKY+SVEHRVI+QTDG  RMS+ASFYNPGSDAVIYPAP L
Sbjct:   44 EFLDTVERLTKEHYRQCLEQRFKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGT-RMSIASFYNPGSDAVIYPAPTL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.364e-94
Identity = 167/224 (74.55%), Postives = 185/224 (82.59%), Query Frame = 2
Query:    5 PEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            PE MDTVER+TKAHY+KCMEQRFKELVAS+ALEGIQ EV DMDWEST+++RHLPQS I+EVPDLDEEYR+VM                          GYLKK F+G  GP FGTKV+NYPPCPK DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP++HSIV+NLGDQ+EVITNGKYKSV HRV++QTDG  RMS+ASFYNPG+DAVIYPAPAL
Sbjct:   43 PELMDTVERVTKAHYKKCMEQRFKELVASKALEGIQAEVTDMDWESTYFLRHLPQSNISEVPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQTDGT-RMSIASFYNPGNDAVIYPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.270e-93
Identity = 168/223 (75.34%), Postives = 183/223 (82.06%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE++TK HY+KCMEQRFKELVAS+ALEG+Q EV DMDWESTF+++HLP S I+EVPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+Q DG  RMSLASFYNPGSDAVIYPAPAL
Sbjct:   44 EVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDG-ARMSLASFYNPGSDAVIYPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.825e-93
Identity = 167/223 (74.89%), Postives = 182/223 (81.61%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM                          GYLKK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  RMSLASFYNPGSDAVIYPAP L
Sbjct:   44 EVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGT-RMSLASFYNPGSDAVIYPAPTL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.188e-91
Identity = 164/223 (73.54%), Postives = 180/223 (80.72%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE+ TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM                          GYLKK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIV+NLGDQ+EVITNGKYKSV HRVI+QTDG  RMSLASFYNP SDAVIYPAPAL
Sbjct:   44 EVMDTVEKFTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGT-RMSLASFYNPASDAVIYPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.552e-91
Identity = 164/223 (73.54%), Postives = 181/223 (81.17%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  RMSLASFYNPG+DAVIYPAP+L
Sbjct:   44 EVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGT-RMSLASFYNPGNDAVIYPAPSL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.516e-91
Identity = 157/223 (70.40%), Postives = 181/223 (81.17%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            EF+D VE++T+ HY+KCME+RFKE V S+ LE  Q EVNDMDWESTF++RHLP+S I+++ DLDEEY+K+M                          GYLKK F+G+ GPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG WIDVPP+RH+IVVNLGDQ+EVITNG+YKSV HRV++QT G GRMS+ASFYNPGSDAVIYPAPAL
Sbjct:   44 EFLDMVEKMTRDHYKKCMEERFKETVLSKGLEAAQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTSGTGRMSIASFYNPGSDAVIYPAPAL 266          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.716e-90
Identity = 163/223 (73.09%), Postives = 179/223 (80.27%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM                          GYLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  RMSLASFYNPGSDAVIYPA  L
Sbjct:   44 EVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGT-RMSLASFYNPGSDAVIYPAKTL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.516e-90
Identity = 161/223 (72.20%), Postives = 180/223 (80.72%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I EVPDLD++YR+VM                          GYLKK+F+G  GP FG+KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV+GLQLLKDGQWIDVPP+R SIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  RMSLASFYNPGSDAVI+PAP L
Sbjct:   44 EVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNICEVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTDGT-RMSLASFYNPGSDAVIFPAPTL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 8.516e-90
Identity = 152/223 (68.16%), Postives = 183/223 (82.06%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E +D VE++TK HY+KCME+RFKE + +R L+ +++EVND+DWESTFY++HLP S I++VPDLD++YR +M                          GYLKKVF+G+  PTFGTKVSNYPPCP PDL+KGLRAHTDAGGIILLFQDDKVSGLQLLKDG+W+DVPP++HSIVVNLGDQ+EVITNGKYKSVEHRV+SQTDGEGRMS+ASFYNPGSD+VI+PAP L
Sbjct:   44 ELLDKVEKMTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPEL 266          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO_PRUMU1.959e-9473.991-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_DIOKA4.364e-9474.551-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO1_PETHY1.270e-9375.341-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO3_PETHY4.825e-9374.891-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO4_PETHY1.188e-9173.541-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO4_SOLLC1.552e-9173.541-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO1_CUCME4.516e-9170.401-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO1_SOLLC1.716e-9073.091-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_TOBAC8.516e-9072.201-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO1_ARATH8.516e-9068.161-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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