CX298457

Overview
NameCX298457
Unique NameCX298457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.305e-46
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  264 EIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.616e-46
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  264 EIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.616e-46
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAIEKLG RH EHIAAYG+GNERRLTGRHETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  264 EVIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.256e-45
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  264 EVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.256e-45
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI+KLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  264 EVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.640e-45
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  264 EVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.654e-45
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAIEKL  RH EHI+AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  265 EVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.773e-45
Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            ++IKKAIEKLG RH EHIAAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  264 EIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 6.233e-45
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 275
            +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  264 EVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 6.233e-45
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 278
            +VIK+AIEKLG+RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  264 EVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
The following BLAST results are available for this feature:
BLAST of CX298457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA1_ALNGL3.305e-4693.55Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_VITVI9.616e-4693.55Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA2_PHAVU9.616e-4692.47Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_VITVI1.256e-4594.62Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA1.256e-4593.55Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_VIGAC1.640e-4593.55Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA_PINSY3.654e-4591.40Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_MEDSA4.773e-4589.25Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA_LACSA6.233e-4595.60Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA5_MAIZE6.233e-4592.39Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionC06012D07SK RindPdig24 Citrus clementina cDNA clone C06012D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298457 ID=CX298457; Name=CX298457; organism=Citrus clementina; type=EST; length=518bp
TTGATGTGATCAAGAAGGCAATTGAAAAGTTGGGGAAACGCCACGGGGAA
CACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACAGGTCGACA
TGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTG
CCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTT
GAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAAT
GATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCA
TCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCA
CCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGCATTT
AAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCCGTTT
CTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATTATAG
TTTAAAACTAAAAAAAAA
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