CX298467

Overview
NameCX298467
Unique NameCX298467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct: 1001 QSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct: 1001 QSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVR+DPFTS  T  +   +CGINC
Sbjct:  991 QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  999 QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  999 QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++   CGINC
Sbjct: 1007 QSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-TCGINC 1081          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            QSWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPF    TK     +CGINC
Sbjct:  952 QSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVL-KTKGPDTSKCGINC 1026          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANS-NGQCGI 233
            QSWGPLFGKLFFA+WVIAHLYPFLKGLLGRQNRTPTIVIVWS+LLASIFSLLWVR++PF   +  AN+ NG+ G+
Sbjct: 1006 QSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNANNFNGKGGV 1080          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  981 EAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  981 EAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
The following BLAST results are available for this feature:
BLAST of CX298467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA1_ORYSJ1.618e-3282.89Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI1.618e-3282.89Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA3_ARATH4.406e-3080.26Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ4.406e-3078.95Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI4.406e-3078.95Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ7.515e-3078.95Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA7_ARATH7.515e-3076.32Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ARATH2.187e-2980.00Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA9_ORYSJ4.871e-2975.00Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI4.871e-2975.00Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC06012E05SK RindPdig24 Citrus clementina cDNA clone C06012E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298467 ID=CX298467; Name=CX298467; organism=Citrus clementina; type=EST; length=674bp
GAGGGTGGCTCCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTGCC
ATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGTCG
TCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGCTT
CCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATGAC
ACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATGTT
GGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCATCA
GTGTATATGAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAATTT
ACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTCAT
TTGTCGTGGAGCCTACTAAGGAGGACTTGAGGCTTTAGTAAAACCCTTTT
TGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCGTACAG
ATGCTAGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTGTG
AAGCTCCATTTTCTCAAGTTCAGAGCGCTAAGAAACAATGTAATCCTCTG
TTTGTGAAAAAAAAAAATGTTACATTCTGCTGTTATGAGATGGTATTATG
GTCAAAAAAAAAAAAAAAAAAAAA
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