CX298673

Overview
NameCX298673
Unique NameCX298673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298673 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 2
Query:    2 LETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 232
            LETEELGVSILQDLH QRQSLL AH TLHGVDDN+ KSKKILT M+RRM+R+KW +G+II+VLV AI+ ILYFKLTR
Sbjct:  145 LETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221          
BLAST of CX298673 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    2 LETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 232
            +ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI KSKKILT M+RRM+++KW +G+II  L+ AI +ILYFKLT+
Sbjct:  145 METEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221          
BLAST of CX298673 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.872e-25
Identity = 54/76 (71.05%), Postives = 67/76 (88.16%), Query Frame = 2
Query:    2 LETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 229
            LETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I KSKK+LTAMSRRM+R+KWI+ S+I  LV AI+LI+ +KL+
Sbjct:  146 LETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221          
The following BLAST results are available for this feature:
BLAST of CX298673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
VTI13_ARATH1.338e-2879.22Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI11_ARATH3.644e-2672.73Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI12_ARATH6.872e-2571.05Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC06014C09SK RindPdig24 Citrus clementina cDNA clone C06014C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298673 ID=CX298673; Name=CX298673; organism=Citrus clementina; type=EST; length=347bp
GCTGGAAACGGAAGAGCTTGGAGTCTCGATCCTGCAAGATTTGCATCAAC
AACGCCAATCTCTTCTGCACGCTCATAACACGCTCCATGGGGTGGATGAC
AATATTAGCAAAAGCAAGAAGATCCTGACAGCCATGTCAAGAAGGATGAG
CAGGGACAAATGGATCATGGGCTCCATAATCTCAGTTCTTGTCTTTGCTA
TTTTACTTATACTTTATTTTAAGCTCACTCGTTAGCCTGCCGGTGTGCAA
GTTGTTGAATACATTTGCAACCTGTGCTGCTTGGCATCATTCACCCAATG
CTTATGGAGTAACCTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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