CX298691

Overview
NameCX298691
Unique NameCX298691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig396 contig Ccv1_Contig396:1131..1788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.452e-30
Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 398
            A LAY+LY+K FS PRW+ L   GAK QR LWASTS K+P  PDTLYV  LI P TV+TMP+  L+AF DHG V   TI  N  +A  + + L +LG+D   V   LE+EGV  F+ S++ LLDT++E+  S
Sbjct:  235 ARLAYELYEKIFSTPRWERLAAAGAKPQRPLWASTSTKDPGLPDTLYVTELIAPGTVNTMPEATLEAFADHGVVPGDTITPNYEDARAVLAELTELGVDMADVVEVLEVEGVRKFEDSWNQLLDTIREQLGS 366          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.412e-30
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 398
            A LAYQ++++ FS  RW  L + GA  QR LWAST VK+PAYPDTLYV  L+ P+ V+TMP++ L A  DHG VS  TI     EA G+ +ALE LGI +N V   LE EG++ F  S+  LLD +Q+  NS
Sbjct:  235 ARLAYQVFEEVFSSERWALLAEAGALPQRPLWASTGVKDPAYPDTLYVTELVAPNVVNTMPEKTLDATADHGVVSGNTISGRYDEANGVLNALEGLGISYNEVVALLEKEGLEKFVASWKELLDHVQDALNS 366          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.041e-28
Identity = 64/129 (49.61%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEK 389
            A LAY+ Y+K F+ PRW AL  KGAK QR LWASTS K+P+ PDT+YV+ LI P TV+TMP+  LQAF DHG V   TI  +  +A  +++AL  +G+D + V   LE +GV  F+ S++ LL T+ ++
Sbjct:  235 ARLAYERYEKAFATPRWKALAAKGAKPQRPLWASTSTKDPSLPDTIYVSELIAPGTVNTMPEATLQAFADHGQVKGETIRPHYDDARQVFAALAAVGVDIDDVIETLETQGVQKFEDSWNQLLGTIAQQ 363          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.963e-27
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 380
            A LA++ Y+K F+ PRW AL   GAK QR LWASTS K+P+ PDT+YV  LI P TV+TMP+  L+AF DHG+V+  TI     EA  +++ L  +GID + V   LE +GV  F+ S+  LLDT+
Sbjct:  235 ARLAFERYEKAFATPRWAALAAAGAKPQRPLWASTSTKDPSLPDTIYVTELIAPGTVNTMPEATLEAFADHGSVTGETIRPRYEEAHEVFAQLTAVGIDLDDVIETLESQGVQKFEDSWTQLLDTI 360          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSL 368
            A LAY+ Y++KF+ PRW AL  KGA+ QR LWASTS K+P+ PDTLYV  L+ P TV+TMP+  LQA  DHG +   TI    ++A+    AL  LGID++ V   LE EGV+ F+ S+  L
Sbjct:  234 ARLAYRTYEEKFATPRWQALAAKGARPQRPLWASTSTKDPSLPDTLYVTELVAPGTVNTMPESTLQAVYDHGVIRGDTIRGYYADAQATLDALATLGIDYDDVTDTLEREGVEKFEASWTEL 355          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALE--KLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 401
            A +AYQ Y+K     RW AL  KGAK+QRLLWASTS KNPAY D +YV  LIGP+TV+T+P   + A  DH  V   ++ N+   + +   L+   + I+ + V  QL +EG+D F K F SL+++L+EK   L
Sbjct:  244 AKIAYQEYKKIIQSDRWKALSAKGAKEQRLLWASTSTKNPAYSDVMYVDELIGPNTVNTLPPPTIDACADHCDVDNRVETNIEVTKEVMENLKDPDININIDQVMEQLLVEGIDKFIKPFTSLINSLEEKVKKL 377          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLVS 413
            A LAYQ+Y++ F+  RW  L + GA  QR LWAST VK+PAYPDTLYV  L+ P  V+TMP++ L A  DHG V+  T+    ++A     ALEKLG+ +N V   LE EG+D F  S+  LL  ++    S +  S
Sbjct:  235 ARLAYQVYEELFATERWALLAEAGALPQRPLWASTGVKDPAYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDTVSGTYADANATLDALEKLGVSYNEVVALLESEGLDKFVASWKELLADVEGALASARKAS 371          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_NEIMB (Transaldolase OS=Neisseria meningitidis serogroup B GN=tal PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 380
            A  AYQ + + F  P + AL  KGA + +LLWAST VKNPAYPDTLYV  LIG  TV+T+PD  L+AF+DHG    T+   V EA+   +    LGID   + T+L+ +G+  F+++F+ LL  L
Sbjct:  226 AKAAYQDWAQYFGSPEFAALETKGANRVQLLWASTGVKNPAYPDTLYVDSLIGAHTVNTVPDATLKAFIDHGTAKATLTEGVEEAQAQLAETAALGIDVETLATRLQEDGLKQFEEAFEKLLAPL 350          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQE 386
            A LAY++Y++ F+G R  ALV  GA +QR LWAST VK+P+ PDTLYV  L+ P+TV+TMP++ L A  DH  ++  T+    + A+G+  AL  LG+D++ V   LE EGVD F  S+  L++T+++
Sbjct:  242 ARLAYKVYEEAFAGDRAKALVAAGANEQRPLWASTGVKDPSLPDTLYVTELVAPNTVNTMPEKTLDATFDHAQLAGDTVTGEYAGAQGVLDALAALGVDYDDVTATLEREGVDKFIVSWGELVETVRK 369          
BLAST of CX298691 vs. ExPASy Swiss-Prot
Match: TAL_ARTS2 (Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 3
Query:    6 AALAYQLYQKKFSGPRWDALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLVS 413
            A LAYQ+Y++ FS  RW  L + GA  QR LWAST VK+P+YPDTLYV  L+ P  V+TMP++ L A  DHG V+  T+     +A    +AL+ LGI +N V   LE EG+D F  S+  LL  ++    S +  S
Sbjct:  235 ARLAYQVYEELFSTERWALLAEAGALPQRPLWASTGVKDPSYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDTVTRGYDDANATLNALDALGISYNDVVALLESEGLDKFVASWKELLGDVEGALASARKAS 371          
The following BLAST results are available for this feature:
BLAST of CX298691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_FRASN1.452e-3052.27Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL_RENSM9.412e-3051.52Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL_FRAAA1.041e-2849.61Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL_FRASC1.963e-2750.00Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL_ACIC17.458e-2750.82Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL_TRIEI4.834e-2645.52Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_ARTCA4.834e-2645.99Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL_NEIMB1.837e-2547.20Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_LEIXX3.133e-2546.09Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]
TAL_ARTS23.133e-2545.26Transaldolase OS=Arthrobacter sp. (strain FB24) GN... [more]

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Properties
Property NameValue
Genbank descriptionC06014E04SK RindPdig24 Citrus clementina cDNA clone C06014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298691 ID=CX298691; Name=CX298691; organism=Citrus clementina; type=EST; length=658bp
GAGGGGCAGCTCTAGCATACCAGCTGTACCAGAAGAAGTTCTCTGGTCCA
AGATGGGACGCTCTTGTGAAGAAAGGTGCAAAGAAGCAGAGACTTCTGTG
GGCCTCAACCAGTGTAAAGAATCCTGCCTACCCTGACACTCTATATGTTG
CTCCTCTCATTGGACCTGATACGGTTTCAACCATGCCAGACCAAGCTCTC
CAAGCATTTGTTGATCATGGTGCAGTTTCAAGAACAATTGACTTGAATGT
TTCTGAGGCTGAAGGCATTTACAGTGCACTGGAGAAGTTGGGAATTGATT
GGAACTACGTTGGCACTCAACTCGAACTTGAAGGGGTAGATTCTTTCAAG
AAGAGCTTTGATAGTCTGCTGGATACCCTGCAAGAGAAGGCAAACTCTCT
CAAGCTGGTTAGTCTGTAAACTGTAATTGTTTTTTTTTTTGCTTAAAACC
CACTTGGCGCAGCTGCGCTGTGCCCTCACCTATGTTTTTGGAGAAATTTT
CACCAAGAATGCAGCGCAGCTGCCCCAATCGGACTCTTATTTTCCGTTGT
GACTGAAATAAATCTAGTGGGTTTTCAATCCCCTTCTCATAATCTGTATG
ACAATAATTATTATGTATGATAAGTGTTTTAGTGCCAAAAAAAAAAAAAA
AAAAAAAA
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