CX298721

Overview
NameCX298721
Unique NameCX298721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: BAT43_CAEEL (BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 44/147 (29.93%), Postives = 80/147 (54.42%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAVLKDSPMKQ 448
            AM ++ M+ES +    + D+  + +R  + Y+YT +    EQ+A  L+  A+KYQ+  LK  CE+ L  +L  DN+ +    A  ++A QL   +++ I  N +++   E + +LV   P+L+ E++ A  ++Q    VL   P K+
Sbjct:  298 AMFEHHMQESDTNMTTVDDIEPEVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYSASQLRAHSINFINVNANEVMDTEGWEDLVRDHPKLLEEVFRALATQQTPPVVLVQPPKKR 444          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 42/134 (31.34%), Postives = 73/134 (54.48%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 409
            AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L + L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  227 AMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVASHPHLVAEAYRSLASAQ 360          
BLAST of CX298721 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 37/135 (27.41%), Postives = 72/135 (53.33%), Query Frame = 2
Query:    8 AMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQV 412
            AM ++EMEE +   + I+DV ++ L+  + ++YT +A   E++A DLL  A+KY ++ LK  CE+ L   L+ + +      A  H+A QL    +  I  +   + +   ++ ++     L+ E + A  ++Q+
Sbjct:  682 AMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQI 816          
The following BLAST results are available for this feature:
BLAST of CX298721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
BAT43_CAEEL1.345e-1629.93BTB and MATH domain-containing protein 43 OS=Caeno... [more]
SPOP_XENTR3.314e-1532.84Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA3.314e-1532.84Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA3.314e-1532.84Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_PONAB2.148e-1432.09Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE2.148e-1432.09Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN2.148e-1432.09Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN2.148e-1432.09Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOP_DANRE2.805e-1431.34Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
RDX_DROME9.024e-1327.41Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]

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Properties
Property NameValue
Genbank descriptionC06014G10SK RindPdig24 Citrus clementina cDNA clone C06014G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298721 ID=CX298721; Name=CX298721; organism=Citrus clementina; type=EST; length=701bp
AGGTTAAGCCATGCTAGATAATGAAATGGAAGAAAGTCGGAGTGGCACTA
TAAAGATCAGTGATGTATCATATGATGCCCTTCGTGCATTTGTCAATTAT
TTGTATACTGCAGAAGCTTGCCTTGATGAGCAATTGGCCTGTGACCTTTT
GGAGTTGGCTGAAAAATATCAGGTGAAGCATCTTAAAGCATACTGTGAGA
AGTTCCTGGTATCCAAACTGAATTGGGACAATTCTGTTGTGAACTATGCT
TTTGCGCACCAGCACAATGCAAAGCAGTTGCTTGAAGCAGCACTGTCATT
GATCACGGACAACATGGACAAGCTTACCAAGTGCGAGGAGTATAGGGAGC
TCGTGGAGAAGGATCCCCGACTTGTAGTGGAAATCTATGAAGCTTACCTT
TCCAAGCAAGTGAATACTGCAGTCCTTAAGGATTCTCCAATGAAGCAATA
GGTGTGTAAGGTTTCTGGGTGTGCTGATCAGATCTGAAGCAAGCCCTGTA
TTATTTTAGAATGGGAGATGAGTCATTGATCAGTGTTAATTATCTAATGT
AGTGCTTTGTCTTCACTCCAAGGGATATGTTGAAGTTTGAAGATGAAAAC
AATATCTGTGATGGCTGCTATGCTATTGGTAGCAAAACTTGAAATTACTG
ACATTTCATGGAATATTAAAAAATTATCTTGTGCCAATTAGGCAATTATT
G
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