CX299041

Overview
NameCX299041
Unique NameCX299041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA HKIAHAT +GPSVVKE+V G+++GL AGGLWKMH WN QR+TR FYDLLE+G
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.318e-19
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA HK+AHAT +GPSVVKE++ G+++GL AGGLWKMH WN QR+TR FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.654e-19
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA HK+AHAT +GPSVVKE+  G+++GL AGGLWKMH WN QR+TR FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C4_ARATH (Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana GN=At5g40382 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 3
Query:   30 KIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            KI  A Y+GPSVVKEI+YGI++G   GGLWKMH WNNQRRT+EFYDLLEKG
Sbjct:    6 KIGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKG 56          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA  +IAHAT +GPSVVKEI  G+++GL AGGLWKMH WN QR+TR FYD+LEKG
Sbjct:    1 MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: COX5C_IPOBA (Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA   +AH  Y+GPSVVKE+V G S+GL AGG WKMH WN+QRRT+EFYD+LEKG
Sbjct:    1 MAGGHVAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: COX5C_HORVU (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            MA  ++AHAT +GPSVVKEI  G+++GL AGG+WKMH WN QR+TR FYD+LEKG
Sbjct:    1 MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C2_HELAN (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.649e-16
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            M   ++AH   +GPSVVKE+V G  +GL AGGLWKMH WN QR+TR FYDLLEKG
Sbjct:    1 MGGGRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKG 55          
BLAST of CX299041 vs. ExPASy Swiss-Prot
Match: CX5C1_HELAN (Cytochrome c oxidase subunit 5C-1 OS=Helianthus annuus GN=COX5C1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   18 MAAHKIAHATYQGPSVVKEIVYGISIGLFAGGLWKMHQWNNQRRTREFYDLLEKG 182
            M   ++AH   +GPS VKE++ G  +GL AGGLWKMH WN QR+TR FYDLLEKG
Sbjct:    1 MVGGRVAHPVLKGPSEVKELIIGSVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKG 55          
The following BLAST results are available for this feature:
BLAST of CX299041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CX5C3_ARATH2.540e-1974.55Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH3.318e-1970.91Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH9.654e-1970.91Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
CX5C4_ARATH2.151e-1876.47Putative cytochrome c oxidase subunit 5C-4 OS=Arab... [more]
COX5C_ORYSJ6.257e-1870.91Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
COX5C_IPOBA6.257e-1869.09Cytochrome c oxidase subunit 5C OS=Ipomoea batatas... [more]
COX5C_HORVU1.394e-1767.27Cytochrome c oxidase subunit 5C OS=Hordeum vulgare... [more]
CX5C2_HELAN7.649e-1665.45Cytochrome c oxidase subunit 5C-2 OS=Helianthus an... [more]
CX5C1_HELAN6.475e-1561.82Cytochrome c oxidase subunit 5C-1 OS=Helianthus an... [more]
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Properties
Property NameValue
Genbank descriptionC06018C04SK RindPdig24 Citrus clementina cDNA clone C06018C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299041 ID=CX299041; Name=CX299041; organism=Citrus clementina; type=EST; length=372bp
GACAGTAATAGAAGGTTATGGCTGCGCATAAGATTGCACATGCTACTTAT
CAGGGTCCCAGTGTGGTGAAAGAGATTGTCTATGGGATATCTATCGGCCT
CTTTGCTGGAGGATTGTGGAAAATGCACCAATGGAATAACCAACGCCGAA
CGCGGGAATTTTACGATCTGCTCGAGAAAGGTGAAATTAGTGTTGTGGTC
GAAGATGAGTAGGATGATGTATCTTTAGTTAGTCAGCAAGAGCTACTTTA
AGAACATATGTTGTTTACCTGATGTGCCTGCAGAATATGCTGGCAGGTCG
AAGTTTCTATCAATTTGAAGAGTAATATGATGGTTTGTTGTTGACTGTTT
AGACAAAAAAAAAAAAAAAAAA
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