CX299047

Overview
NameCX299047
Unique NameCX299047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX299047 vs. ExPASy Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.615e-62
Identity = 125/242 (51.65%), Postives = 150/242 (61.98%), Query Frame = 1 
Query:    4 VRTEFFLNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKMTVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDXXXXXXXXXXXXXXRTPPEILRIVYGTGSENSQEDFFP 729
            +  EFF   A G+G+D +EPE+A GGP P G  KANL      II +F YQE GH+RAI ++V GF RP +DLS ++FA + D A G  L PPFDPY+N +NYLLA YV+PYVGL GYVG  P L +  SR LVAGLL VE+GQDA+IR LLYERA   V PY +TVAEFT++IS LRN+LG +G KD GL V   LGAE +                RTP   L          S   F P
Sbjct:   52 LEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIP 293
The following BLAST results are available for this feature:
BLAST of CX299047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRPE_CRAPL5.615e-6251.65Desiccation-related protein PCC13-62 OS=Craterosti... [more]
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Properties
Property NameValue
Genbank descriptionC06018C10SK RindPdig24 Citrus clementina cDNA clone C06018C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299047 ID=CX299047; Name=CX299047; organism=Citrus clementina; type=EST; length=778bp
GAGGTTAGAACTGAATTCTTCTTAAATGGTGCACTCGGCAGAGGACTTGA
CAGTATAGAGCCAGAGATGGCAGCGGGTGGTCCTCCTCCGACTGGCGCCA
GCAAGGCCAACCTTGACCATACTACATATCGGATCATTGAGGAATTCGGT
TATCAGGAGATTGGTCATCTCAGGGCTATCGTAACAACAGTTGGTGGATT
TGCAAGGCCTCAGATAGATCTCAGCCGTCAAAATTTCGCCAATATATTTG
ACCAAGCAGTTGGTTACAAACTCACTCCTCCATTCGACCCTTATTCCAAC
ACTGTCAATTATCTCTTAGCAAGCTATGTCATCCCTTATGTGGGACTCGT
CGGTTATGTTGGCACCATTCCCAACCTTGTCAACTGCACTTCTCGTAGTT
TAGTTGCAGGGCTCTTAGGAGTGGAGTCTGGACAAGATGCAGTAATACGG
ACGTTACTATACGAGAGGGCTGACCAGATTGTGGTTCCTTATAAGATGAC
AGTAGCTGAATTCACTGACCGTATCTCCGCCCTTAGGAACCGGCTTGGCA
AGCGCGGAAACAAAGATGAGGGCCTAAGGGTGCCACGGAGACTTGGCGCT
GAGAACAGGACAGATAGTAACATTCTATCAGCCAATGCTAATTCCCTATC
CTACTCTCGAACTCCGCCGGAGATTTTAAGGATTGTGTACGGAACTGGCA
GTGAAAATAGCCAGGAGGATTTTTTCCCATGGTGGCAACGGGCAGTTGCC
AAGAGGTTCTGCTGCACTTATCATGCTC
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