CX299050

Overview
NameCX299050
Unique NameCX299050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.815e-38
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            L+GP+G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:   65 LLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.518e-37
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            L+GP GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:   62 LVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.192e-36
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            LIGP GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    8 LIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.331e-36
Identity = 67/90 (74.44%), Postives = 79/90 (87.78%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            LIGP+G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    8 LIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 65/90 (72.22%), Postives = 79/90 (87.78%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            L+GP+G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   65 LVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.400e-35
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 3
Query:   21 GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:   14 GLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.680e-34
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            LI P+GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    8 LITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.500e-34
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 3
Query:    6 LIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            LI P+GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    8 LITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.500e-34
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = 3
Query:   21 GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:   14 GTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CX299050 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.500e-34
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = 3
Query:   21 GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 275
            G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:   14 GTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CX299050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER3_ARATH6.815e-3876.67Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE1.518e-3777.78Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA2.192e-3674.44Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA8.331e-3674.44Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE3.166e-3572.22Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA5.400e-3577.65Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_SYNY42.680e-3473.33Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY33.500e-3473.33Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_NOSMU3.500e-3476.47Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP3.500e-3476.47Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06018D02SK RindPdig24 Citrus clementina cDNA clone C06018D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299050 ID=CX299050; Name=CX299050; organism=Citrus clementina; type=EST; length=452bp
GAGGGCTGATTGGACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAA
GACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTA
TTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTG
GTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAG
GCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTGAT
TCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAG
GGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGT
TTCTCATGGACCTACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCA
ATGGAATCTTTAAATTTTCATTTGGTTNAAAAAAAAAAAAAAAAAAAAAA
AA
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