CX299051

Overview
NameCX299051
Unique NameCX299051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_CYAPA (Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 73/126 (57.94%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 LGPTVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 379
            LG  +P+ GVC+G Q +G  FGGKI+++P  ++HGK S++++D KG   +   L NP TA RYHSL+IEKES P D LE+TAWTEDGLIM  +HKKYK LQG+QFHPESI+T  GK I++NFI  +
Sbjct:   69 LGNQIPILGVCLGHQTIGHVFGGKIIKAPK-LIHGKPSIIFHDGKG---VFQNLKNPITATRYHSLIIEKESCP-DELEITAWTEDGLIMGIQHKKYKQLQGIQFHPESILTESGKQILQNFINCL 189          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_PORPU (Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 59/123 (47.97%), Postives = 87/123 (70.73%), Query Frame = 2
Query:    2 LGPTVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            L   +P+ GVC+G Q +G   GG I++ P  +MHGK+S +Y+D    + L   L NPF A RYHSL+I++ +FP++ L VTAWT++ +IMA RHK YK L+G+QFHPES+ T  G+ +++NF+
Sbjct:   69 LAEYIPILGVCLGHQSIGYINGGSIIKVPK-IMHGKTSQIYHDR---EDLFINLPNPFIATRYHSLIIDRANFPTN-LAVTAWTDNNIIMACRHKHYKMLRGIQFHPESLWTVCGQQLLKNFL 186          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_THEMA (Anthranilate synthase component II OS=Thermotoga maritima GN=trpGD PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 376
            VP+ GVC+G Q +G AFGGKIV +   ++HGK+S + ++ KG   + +G+ NP  A RYHSLV+E+ S P + LE+TA ++DG IM  +HK++    GVQFHPES++T EGK I++NF+ +
Sbjct:  120 VPILGVCLGHQVIGYAFGGKIVHAKR-ILHGKTSKIVHNGKG---VFSGVKNPLVATRYHSLVVEEASLP-EVLEITAKSDDGEIMGLQHKEHPTF-GVQFHPESVLTEEGKRIIKNFLNI 234          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_PSEAE (Anthranilate synthase component II OS=Pseudomonas aeruginosa GN=trpG PE=4 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 373
            +PL GVC+G Q +G+AFGG++VR+   VMHGK+S +++ + G   + AGL+NP T  RYHSLV+++ES P + LEVTAWT+  DG    IM  RHK   +++GVQFHPESI+T +G  ++ NF++
Sbjct:   73 LPLLGVCLGHQSIGQAFGGEVVRARQ-VMHGKTSPIHHKDLG---VFAGLANPLTVTRYHSLVVKRESLP-ECLEVTAWTQHADGSLDEIMGVRHKTL-NVEGVQFHPESILTEQGHELLANFLR 191          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_PSEPU (Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT--EDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 373
            +P+ GVC+G Q +G+AFGG +VR+   VMHGK+S V++ + G   +  GL+NP T  RYHSLV+++E+ P D LEVTAWT  EDG    IM  RHK   +++GVQFHPESI+T +G  +  NF+K
Sbjct:   74 LPILGVCLGHQSIGQAFGGDVVRARQ-VMHGKTSPVHHRDLG---VFTGLNNPLTVTRYHSLVVKRETLP-DCLEVTAWTAHEDGSVDEIMGLRHKTL-NIEGVQFHPESILTEQGHELFANFLK 192          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_PORYE (Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 56/121 (46.28%), Postives = 86/121 (71.07%), Query Frame = 2
Query:   11 TVPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 373
            ++P+ GVC+G Q +G   GG+I++    +MHGK+S +Y++    + L   L NPF A RYHSL+I+  +FPS +L +TAWTE+ +IMA RHK  + L+G+QFHPES+ T  G+ ++RNF++
Sbjct:   72 SIPILGVCLGHQSIGYLNGGRIIKVS-EIMHGKTSKIYHNN---EDLFKTLPNPFIATRYHSLIIDNLNFPS-SLAITAWTENNIIMACRHKDNQMLRGIQFHPESLWTFYGQQLLRNFLE 187          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: PABA_ECOLI (Para-aminobenzoate synthase glutamine amidotransferase component II OS=Escherichia coli (strain K12) GN=pabA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 370
            +P+ GVC+G Q M +AFGGK+VR+   VMHGK+S + ++    +G+  GL+NP T  RYHSLV+E +S P+   +VTAW+E   IM  RH+++  L+GVQFHPESI++ +G  ++ NF+
Sbjct:   73 LPILGVCLGHQAMAQAFGGKVVRAAK-VMHGKTSPITHNG---EGVFRGLANPLTVTRYHSLVVEPDSLPA-CFDVTAWSETREIMGIRHRQW-DLEGVQFHPESILSEQGHQLLANFL 185          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_ACIAD (Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT--EDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 376
            +PL GVC+G Q +G+AFGG I+R+   VMHG+ S +Y+ +KG   + + L +PF+A RYHSLVIE+ES P + LEVT WT   DG    IM  +HK    ++GVQFHPESI++  G  I +NF+++
Sbjct:   73 IPLLGVCLGHQAIGQAFGGNIIRAKT-VMHGRLSDMYHTDKG---IFSNLPSPFSATRYHSLVIEQESLP-ECLEVTCWTNQNDGSIEEIMGVKHKTLP-VEGVQFHPESILSQHGHQIFKNFLEI 192          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: TRPG_AZOBR (Anthranilate synthase component 2 OS=Azospirillum brasilense GN=trpG PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 397
            VPL GVC+G Q +G+ FGG +VR+P+  MHGK   +++  +   G+L  L +PF A RYHSL++E+ + P+  LEVT  TEDGLIMA  H++   + GVQFHPESI +  G  I+ NF+    R E A
Sbjct:   74 VPLMGVCLGHQAIGQPFGGTVVRAPV-PMHGKVDRMFHQGR---GVLKDLPSPFRATRYHSLIVERATLPA-CLEVTGETEDGLIMALSHRELP-IHGVQFHPESIESEHGHKILENFLNTTRRLETA 195          
BLAST of CX299051 vs. ExPASy Swiss-Prot
Match: PABA_BACSU (Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis GN=pabA PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 2
Query:   14 VPLFGVCMGLQCMGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 391
            +P+FGVC+G Q + + FGG +VR+   +MHGK+S + +D K    +  GL NP  A RYHSL+++ E+ PS    VTA T++G IMA RH     ++GVQFHPESI+T+ GK ++RNFI+   RKE
Sbjct:   73 IPIFGVCLGHQSIAQVFGGDVVRAER-LMHGKTSDIEHDGKT---IFEGLKNPLVATRYHSLIVKPETLPS-CFTVTAQTKEGEIMAIRHNDLP-IEGVQFHPESIMTSFGKEMLRNFIE-TYRKE 191          
The following BLAST results are available for this feature:
BLAST of CX299051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TRPG_CYAPA2.104e-3657.94Anthranilate synthase component II OS=Cyanophora p... [more]
TRPG_PORPU1.367e-2747.97Anthranilate synthase component II OS=Porphyra pur... [more]
TRPG_THEMA9.796e-2648.76Anthranilate synthase component II OS=Thermotoga m... [more]
TRPG_PSEAE9.796e-2650.40Anthranilate synthase component II OS=Pseudomonas ... [more]
TRPG_PSEPU2.182e-2551.20Anthranilate synthase component II OS=Pseudomonas ... [more]
TRPG_PORYE3.723e-2546.28Anthranilate synthase component II OS=Porphyra yez... [more]
PABA_ECOLI1.083e-2447.90Para-aminobenzoate synthase glutamine amidotransfe... [more]
TRPG_ACIAD2.413e-2449.21Anthranilate synthase component 2 OS=Acinetobacter... [more]
TRPG_AZOBR3.151e-2447.66Anthranilate synthase component 2 OS=Azospirillum ... [more]
PABA_BACSU1.198e-2348.41Para-aminobenzoate/anthranilate synthase glutamine... [more]

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Properties
Property NameValue
Genbank descriptionC06018D03SK RindPdig24 Citrus clementina cDNA clone C06018D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299051 ID=CX299051; Name=CX299051; organism=Citrus clementina; type=EST; length=725bp
ACTTGGACCTACTGTGCCTCTGTTTGGCGTTTGTATGGGTTTGCAGTGCA
TGGGAGAGGCTTTTGGAGGGAAGATTGTGCGTTCTCCTCTTGGTGTCATG
CATGGAAAAAGTTCTCTTGTGTATTATGATGAGAAAGGGGAGGATGGCTT
GCTTGCTGGACTATCAAATCCTTTCACAGCAGGTAGATATCATAGCCTTG
TGATTGAGAAAGAAAGCTTTCCTAGTGATGCGCTGGAAGTTACAGCATGG
ACAGAAGATGGGCTGATAATGGCTGCTCGTCACAAGAAATATAAGCATCT
GCAGGGGGTTCAATTTCATCCGGAGAGCATTATAACCACCGAGGGCAAGA
CAATTGTTCGCAATTTCATCAAAATGATAGTGAGAAAGGAAGCGGCTGAT
TCTCAGAATTAGACTATCAGCCATGTGGCAATATTTCATCAATCAAGCAT
ACCTCATTATTCTAGCAAAAGTTACTGATGCAGTGATTTTCTTTTCCTTA
CAAGATTCAGTACAAAAGTTTGTGGTCCTTGTCTATTAATATGTAGTGTC
TTTGACTCTTGAGAATTTGTTGCAATCTATGTTGGCTTCTCTTGGGGAGA
GGATTTGTATTCAAGGGGATGTTTGGGGTTGCATTAGATTCGTAAATGAT
TTGTTCTTAGATTAGATTTTGAAACATCAGCTTTGAAAAATATTTGATAA
GATGAATGTTTTATAATACTAATCC
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