CX299052

Overview
NameCX299052
Unique NameCX299052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX299052 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   19 LTNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 255
            +TNGTYRSIEHR VVNS +ERLS+AT ++V    EV PA SL+  +    F+R+ ++EY    ++R L GK+ LD+LRI
Sbjct:  280 ITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
The following BLAST results are available for this feature:
BLAST of CX299052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SRG1_ARATH8.918e-1551.90Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC06018D04SK RindPdig24 Citrus clementina cDNA clone C06018D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299052 ID=CX299052; Name=CX299052; organism=Citrus clementina; type=EST; length=519bp
GATCGGCCGAGGGGAGATTTAACCAATGGGACATACCGCAGCATTGAGCA
TCGTGCAGTTGTAAACTCTGTACAGGAAAGACTTTCCGTTGCCACAGTTT
ACTCAGTGAGATATGATGGTGAAGTGTATCCTGCCTCCAGTTTGATCTCT
GAAAAAACTCCTCCTTTGTTTAGAAGAGTGAGAATTGAAGAATACTTTAG
GAGCCGGTATGCTCGTGAGCTTAGGGGAAAATCTCAGTTGGATTCCCTGA
GAATTCAACATGGTCAAGGCTAGTATAAGTTTATTTTGGATAACTAAAGA
GTTTGGTACAAAAACTCTTAAGGACCTTGCTATTAAGATTGGCGTGGAAC
TGAAAATAAGAAATAAGTTCTATGAATACTGTGGTATAACCTGCTATGCT
AGGGTCGTTGTGTAGCTCTATCATTTGAGATACTGAATAGACCATGTAAG
AATCTTAATTATTGCAGACTTATGCCTGGAATCTTCCGATGATATATGGT
GGTGCTTATATCAAAAAAA
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