CX299053
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.175e-48 Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVF 312 NVLVATDV GRGIDIPDVAHVINYDMP +IEMYTHRIGRTGRAGK+GVAT+FLT HDT+VFYDLKQML+QSNS VPPELA+HEAS+FKPGT+PDRPPR +DTV+ Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTVPDRPPRHSDTVY 731
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.697e-47 Identity = 87/104 (83.65%), Postives = 99/104 (95.19%), Query Frame = 1 Query: 4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315 VLVATDVAGRGIDIPDVAHVINY+MP +I+ YTHRIGRTGRAGK G+AT+FLT +TD+F+DLKQMLIQSNSPVPPELA+HEASKFKPG++PDRPPRRNDTV+A Sbjct: 631 VLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGSVPDRPPRRNDTVYA 734
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.760e-36 Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR 285 NVLV TDV GRG+DI D+A VINYDMP +++YTHRIGRTGRAGKTGVATTFLT D DVFY LKQ L + NS VPPELA+HEASKFKPGT PDR Sbjct: 524 NVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNSLVPPELARHEASKFKPGTFPDR 618
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29 Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315 ++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+ VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA Sbjct: 716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTK-KRREETIFA 820
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29 Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315 ++LVATDVAGRGIDI DV+ V+NYDM NIE Y HRIGRTGRAGK+GVA TFLT D+ VFY+LKQ +++S S PPELA H ++ KPGTI + RR +T+FA Sbjct: 716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTK-KRREETIFA 820
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.144e-27 Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267 +VLVATD+AGRGID+PDV+ V+N++M NIE YTHRIGRTGRAGK+GVA TFL D DV YDLKQML++S+ S VP EL KHEA++ KP Sbjct: 704 DVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQSKP 793
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 3.327e-27 Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267 +VLVATD+AGRGID+PDV+ VIN++M +IE YTHRIGRTGRAGK+GVA TFL D DV YDLKQMLI+S S VP EL KHEA++ KP Sbjct: 673 DVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP 762
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.345e-27 Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267 +VLVATD+AGRGID+PDV+ VIN++M IE YTHRIGRTGRAGK+GVA TFL DTDV YDLKQM+++S+ S +P EL KHEA++ KP Sbjct: 694 DVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEELRKHEAAQSKP 783
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27 Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267 +VLVATD+AGRGID+PDV+ V+N++M +IE YTHRIGRTGRAGK+GVA TFL D DV YDLKQML++S S VP EL KHEA++ KP Sbjct: 686 DVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSKP 775
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27 Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267 +VLVATD+AGRGID+PDV+ V+N++M +IE YTHRIGRTGRAGK+GVA TFL D DV YDLKQMLI+S S VP EL KHEA++ KP Sbjct: 674 DVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDELRKHEAAQQKP 763 The following BLAST results are available for this feature:
BLAST of CX299053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299053 ID=CX299053; Name=CX299053; organism=Citrus clementina; type=EST; length=572bpback to top |