CX299053

Overview
NameCX299053
Unique NameCX299053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.175e-48
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVF 312
            NVLVATDV GRGIDIPDVAHVINYDMP +IEMYTHRIGRTGRAGK+GVAT+FLT HDT+VFYDLKQML+QSNS VPPELA+HEAS+FKPGT+PDRPPR +DTV+
Sbjct:  628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTVPDRPPRHSDTVY 731          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.697e-47
Identity = 87/104 (83.65%), Postives = 99/104 (95.19%), Query Frame = 1
Query:    4 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315
            VLVATDVAGRGIDIPDVAHVINY+MP +I+ YTHRIGRTGRAGK G+AT+FLT  +TD+F+DLKQMLIQSNSPVPPELA+HEASKFKPG++PDRPPRRNDTV+A
Sbjct:  631 VLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGSVPDRPPRRNDTVYA 734          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.760e-36
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDR 285
            NVLV TDV GRG+DI D+A VINYDMP  +++YTHRIGRTGRAGKTGVATTFLT  D DVFY LKQ L + NS VPPELA+HEASKFKPGT PDR
Sbjct:  524 NVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNSLVPPELARHEASKFKPGTFPDR 618          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315
            ++LVATDVAGRGIDI DV+ V+NYDM  NIE Y HRIGRTGRAGK+GVA TFLT  D+ VFY+LKQ +++S  S  PPELA H  ++ KPGTI  +  RR +T+FA
Sbjct:  716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTK-KRREETIFA 820          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 315
            ++LVATDVAGRGIDI DV+ V+NYDM  NIE Y HRIGRTGRAGK+GVA TFLT  D+ VFY+LKQ +++S  S  PPELA H  ++ KPGTI  +  RR +T+FA
Sbjct:  716 DILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTK-KRREETIFA 820          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.144e-27
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267
            +VLVATD+AGRGID+PDV+ V+N++M  NIE YTHRIGRTGRAGK+GVA TFL   D DV YDLKQML++S+ S VP EL KHEA++ KP
Sbjct:  704 DVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQSKP 793          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.327e-27
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267
            +VLVATD+AGRGID+PDV+ VIN++M  +IE YTHRIGRTGRAGK+GVA TFL   D DV YDLKQMLI+S  S VP EL KHEA++ KP
Sbjct:  673 DVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP 762          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.345e-27
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267
            +VLVATD+AGRGID+PDV+ VIN++M   IE YTHRIGRTGRAGK+GVA TFL   DTDV YDLKQM+++S+ S +P EL KHEA++ KP
Sbjct:  694 DVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEELRKHEAAQSKP 783          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267
            +VLVATD+AGRGID+PDV+ V+N++M  +IE YTHRIGRTGRAGK+GVA TFL   D DV YDLKQML++S  S VP EL KHEA++ KP
Sbjct:  686 DVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSKP 775          
BLAST of CX299053 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.675e-27
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSN-SPVPPELAKHEASKFKP 267
            +VLVATD+AGRGID+PDV+ V+N++M  +IE YTHRIGRTGRAGK+GVA TFL   D DV YDLKQMLI+S  S VP EL KHEA++ KP
Sbjct:  674 DVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDELRKHEAAQQKP 763          
The following BLAST results are available for this feature:
BLAST of CX299053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH21_ARATH1.175e-4885.58DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
RH21_ORYSJ1.697e-4783.65DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
RH44_ARATH1.760e-3676.84Putative DEAD-box ATP-dependent RNA helicase 44 OS... [more]
DDX23_PONAB3.555e-2963.21Probable ATP-dependent RNA helicase DDX23 OS=Pongo... [more]
DDX23_HUMAN3.555e-2963.21Probable ATP-dependent RNA helicase DDX23 OS=Homo ... [more]
PRP28_COCIM1.144e-2768.89Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_EMENI3.327e-2770.00Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPOR4.345e-2767.78Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_NEOFI5.675e-2767.78Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPTN5.675e-2768.89Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]

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Properties
Property NameValue
Genbank descriptionC06018D05SK RindPdig24 Citrus clementina cDNA clone C06018D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299053 ID=CX299053; Name=CX299053; organism=Citrus clementina; type=EST; length=572bp
AATGTTCTTGTTGCCACTGATGTTGCCGGGCGTGGGATTGATATACCTGA
TGTGGCCCATGTCATCAATTATGATATGCCTGGGAATATCGAAATGTATA
CTCATCGTATTGGACGAACAGGCCGTGCTGGGAAGACTGGTGTGGCTACA
ACATTCTTGACCTTCCATGATACTGATGTATTTTATGATCTCAAGCAGAT
GCTTATCCAGAGTAACAGTCCTGTGCCTCCAGAATTGGCTAAACATGAGG
CTTCAAAGTTCAAGCCGGGAACAATCCCTGACAGACCTCCTAGGCGCAAT
GACACTGTTTTTGCTCATTGAGGAATATGATGATTTGAAAGAAACTGTCA
AAAAGGGCTTGCTCAAACGTTTTTGGCTATATAATTCTCTGTTAGGACCT
GATTACTTTTTGCTTGCTGCAGTGGGTAGGAGTGATTATTTGGAGTAAGA
CTATCTGTATTCTGCCTTTCTGAAAGTGGATATTCTTACATGTTGCGCTG
CAGTAAAGTTTCTACCTTCCTGATTGTTTATTGAATAGGAAGGTTTTGAT
AATCAAAAAAAAAAAAAAAAAA
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