CX299058

Overview
NameCX299058
Unique NameCX299058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 2
Query:    2 RLEPDYLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAYSKQKLGQQSVEGGKPTAPAESFLSTLYEN 289
            +L+ +Y LP N+++NAD+TRLINS EIQS++KA  G +R KR +VQKKNPL+NK V+ RLNPYA AY   K   +   G  P A  E FL+ L+EN
Sbjct:  272 QLKKNYFLPENIISNADVTRLINSDEIQSIVKAA-GPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY---KANVKLNTGKTPKAAGEKFLTVLHEN 363          
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.802e-20
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 2
Query:    2 RLEPDYLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAY-SKQKLGQQSVEGGKPTAPAESFLSTLYEN 289
            +L+ +Y LP N+++NAD+TRLINS EIQS++KA  G +R KR +VQKKNPL+NK V+ RLNPYA AY +  K+  +      P A  E FLS L+EN
Sbjct:  272 QLKKNYFLPENIISNADVTRLINSDEIQSIVKAA-GPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYKANVKINSEKT----PKAAGEKFLSVLHEN 363          
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   17 YLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAYSKQKLGQQSVEGGKPTAPAESFLSTL 280
            Y LPS++++ +D+TR+INSSEIQS ++ P G+A  KR +V KKNPL+NKQV+LRLNPYA  ++ +KLG +  E    T PA  F  TL
Sbjct:  274 YTLPSHIISTSDVTRIINSSEIQSAIR-PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAE-KTGTKPAAVFAETL 359          
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   17 YLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAYSKQKLGQQSVEGGKPTAPAESFLSTL 280
            Y LPS++++ +D+TR+INSSEIQS ++ P G+A  KR +V KKNPL+NKQV+LRLNPYA  ++ +KLG +  E    T PA  F  TL
Sbjct:  274 YTLPSHIISTSDVTRIINSSEIQSAIR-PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAE-KTGTKPAAVFTETL 359          
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 RLEPDYLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAYSKQKLGQQ 226
            +L+ DY LP + + N DLTR++ S EIQ  L+AP  + + + +   KKNPL+N ++M+RLNPYA    +  + QQ
Sbjct:  271 KLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRREL---KKNPLKNLRIMMRLNPYAKTARRHAILQQ 342          
BLAST of CX299058 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    2 RLEPDYLLPSNLVANADLTRLINSSEIQSVLKAPKGEARTKRVNVQKKNPLRNKQVMLRLNPYAAAYSKQKLGQQ 226
            +L+ DY LP + + N DLTR++ S EIQ  L+AP  + + + +   KKNPL+N ++M+RLNPYA    +  + QQ
Sbjct:  276 KLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRREL---KKNPLKNLRIMMRLNPYAKTARRHAILQQ 347          
The following BLAST results are available for this feature:
BLAST of CX299058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL4A_SCHPO8.088e-2154.1760S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO1.802e-2053.6160S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST9.887e-1953.4160S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST9.887e-1953.4160S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4B_XENLA4.448e-1142.6760S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA4.448e-1142.6760S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
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Properties
Property NameValue
Genbank descriptionC06018D10SK RindPdig24 Citrus clementina cDNA clone C06018D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299058 ID=CX299058; Name=CX299058; organism=Citrus clementina; type=EST; length=403bp
GAGGCTCGAGCCGGATTACCTTCTGCCCTCCAACCTGGTGGCCAACGCTG
ACCTCACCCGCCTTATCAACTCCTCCGAAATCCAGTCCGTTCTCAAGGCT
CCCAAGGGTGAGGCCCGCACCAAGCGTGTCAACGTCCAGAAGAAGAACCC
TCTCCGCAACAAGCAGGTCATGCTCCGCCTCAACCCCTACGCCGCTGCCT
ACTCCAAGCAGAAGCTTGGCCAGCAGTCCGTCGAGGGTGGCAAGCCTACT
GCTCCTGCCGAGTCCTTCCTCAGCACTCTCTACGAGAACTAAGCGGGTCT
TTCTTTGTCCCCCTGCTATTTCTTTGTTAACTGTTTCGTTGGCAAAATGG
TAGTCAGCAAAAATGAATCAATGCCTTTTTTGCAATAAAAAAAAAAAAAA
AAA
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