CX299722

Overview
NameCX299722
Unique NameCX299722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299722_ssr236 microsatellite CX299722_ssr236:236..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQ
Sbjct:   17 TAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQ 85          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.376e-29
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQ
Sbjct:   17 TAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQ 85          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.094e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQ
Sbjct:   18 TAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.429e-28
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQ
Sbjct:   18 TAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR  GGG+TS++YAIRQ
Sbjct:   18 TATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQ 86          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.668e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQ
Sbjct:   15 TAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQ 82          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.635e-24
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ
Sbjct:   21 TAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.635e-24
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ
Sbjct:   21 TAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQ 89          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  300 GLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            GLIKING PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQ
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQ 85          
BLAST of CX299722 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  264 TAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQ 470
            TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQ
Sbjct:   18 TATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQ 86          
The following BLAST results are available for this feature:
BLAST of CX299722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS16_GOSHI6.852e-3194.2040S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_FRIAG8.376e-2986.9640S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS161_ARATH1.094e-2884.0640S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH1.429e-2882.6140S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS162_ARATH5.082e-2676.8140S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU8.668e-2682.6140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ1.635e-2476.8140S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI1.635e-2476.8140S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_LUPPO1.807e-2392.9840S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_RAT4.026e-2368.1240S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07001F04SK NTLeaf1 Citrus clementina cDNA clone C07001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299722 ID=CX299722; Name=CX299722; organism=Citrus clementina; type=EST; length=472bp
CGGCACGAGGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGATCA
CACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGAAAA
TAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCAGTT
TGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCTCTT
TGTTTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTCTCTCTCT
CTCCCGCAAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTG
GGTTGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATC
CTCCGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATT
CGCCGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGC
AGATCTACGCCATCCGTCAGAG
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