CX299726 | Citrus Genome Database

Overview


Name	CX299726
Unique Name	CX299726
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	428

Libraries


Library Name	Type
NTLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX299726_ssr16	microsatellite	CX299726_ssr16:16..27.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig108	contig	Ccv1_Contig108:968..1357.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.016e-34
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  197 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.016e-34
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  197 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.016e-34
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.327e-34
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  191 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.327e-34
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.732e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.263e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   46 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.263e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.263e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  136 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

[Close]

BLAST of CX299726 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.263e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1

Query:  180 DPLGLAHDPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 392
            DPLGLA DP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  196 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

The following BLAST results are available for this feature:

BLAST of CX299726 vs. ExPASy Swiss-Prot

BLAST of CX299726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB24_TOBAC	1.016e-34	97.18	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB23_NICPL	1.016e-34	97.18	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_TOBAC	1.016e-34	97.18	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB22_ORYSJ	1.327e-34	97.18	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ORYSJ	1.327e-34	97.18	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2B_PINSY	1.732e-34	95.77	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2D_SOLLC	2.263e-34	95.77	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB23_PETSP	2.263e-34	95.77	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB22_CUCSA	2.263e-34	95.77	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB21_TOBAC	2.263e-34	95.77	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07001F08SK NTLeaf1 Citrus clementina cDNA clone C07001F08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX299726 ID=CX299726; Name=CX299726; organism=Citrus clementina; type=EST; length=428bp
GAATTCGGCACGAGGGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTT
TTTTTTTAGATCAAATTGAAGCATTTTATAAATAATCACAACTCAAATTA
AAGCTTCCATGAGCTCACAACAGATTTACATGATATCCAAGAAACCGAAA
AGAGAAAAACTCTTATCAACCGAAGCTCACTTTCCGGGGACAAAGTTGGT
GGCGTAGGCCCAGGCATTGTTATTGACAGGGTCAGCCAAGTGGTCGGCCA
AGTTCTCTAACGGTCCCTTGCCGGTGACAATGGCCTGAACAAAGAAACCA
AACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAG
CTCAGCAAAAGCCTGCGGGTCATGAGCCAAACCCAATGGATCAAAGAAAA
AAAAAAAAAACTGGAGGGGGGGCCCGGT