CX299808

Overview
NameCX299808
Unique NameCX299808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12234 contig Ccv1_Contig12234:788..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.608e-40
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 2
Query:    2 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 235
            DVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.608e-40
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 2
Query:    2 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 235
            DVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 2
Query:    2 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 223
            D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  NL+ HLADP +  V  +
Sbjct:  197 DPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTS 269          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 235
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA++G   Q   Y GTGP++NL  HLADP H  +     PK
Sbjct:  168 YPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPK 241          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 223
            YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  NL+ H+ADP +  V  +
Sbjct:  202 YPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTS 271          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.340e-14
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 235
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLAMLA +G   Q   Y GTGP++NL  HLADP H  +     P+
Sbjct:  167 YPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 229
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DNL+ HLADP +   +A  T
Sbjct:  191 YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYAT 261          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 43/77 (55.84%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 232
            YPG   FDPLG     P+   EL+ KEIKNGRLAM +  G + Q I TG GPI NL  HLADPG    FAA   FTP
Sbjct:  180 YPGES-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   11 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 232
            YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL DP   +A VFA  F P
Sbjct:  191 YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 266          
BLAST of CX299808 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 229
            D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:  188 DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
The following BLAST results are available for this feature:
BLAST of CX299808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB12_SOLLC2.608e-4093.59Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.608e-4093.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB13_SOLLC6.468e-1552.70Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB11_SOLLC1.103e-1455.26Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB23_PEA2.458e-1450.70Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU9.340e-1455.26Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB27_TOBAC2.081e-1354.79Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2_CHLMO4.635e-1355.84Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU4.635e-1353.25Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_ARATH6.054e-1352.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07002F10SK NTLeaf1 Citrus clementina cDNA clone C07002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299808 ID=CX299808; Name=CX299808; organism=Citrus clementina; type=EST; length=399bp
CGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGCTGGGGAT
CCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATCAAGAAT
GGAAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCACATTTA
CACCGGCACCGGCCCCATTGACAATCTCATTGCTCACCTTGCTGATCCTG
GTCATGCCACCGTTTTTGCTGCCTTCACCCCCAAGTGAGATGATGACTAA
CAAAGGGAGAGAAATTTGGGCCAAGTGGAAGCTTGAGATCAAAGGAATTG
GTGTTTCTCTTAGGGAAAGGTTGTATGATTAGAACTTGTATTAATTGCCT
CTATCTATGTACAAAGACTTGTGTGATCACTTAAAAAAAAAAAAAAAAA
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