CX299809

Overview
NameCX299809
Unique NameCX299809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1300 contig Ccv1_Contig1300:196..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.521e-60
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 336
            SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+TGVV+ KKFG+L NWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct:   34 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 3.733e-59
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 336
            SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHETGVV+PKKFGLL NWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct:   35 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.377e-45
Identity = 81/109 (74.31%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 327
            SYGMDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct:   33 SYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.871e-43
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 327
            SYGMDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV+P  F +L NW+RE+TMED+L QLKKEM +  NRKL QP EG
Sbjct:   33 SYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEG 141          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 336
            SYG++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN + GVV+PK   +L NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct:   27 SYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: MMS2_SCHPO (Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe GN=spm2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.300e-31
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 336
            SYG+ + DDI +  W  TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ ETG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct:   27 SYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: MMS2_YEAST (Ubiquitin-conjugating enzyme variant MMS2 OS=Saccharomyces cerevisiae GN=MMS2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.914e-28
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 336
            SYG+ D DDI M  W GTI+GP ++ HE RIY L + C  +YP+ PP V F S+IN+ CVN  TG V+   F  L +W+R YTME +L  L+KEMA P N+KL QP EG  F
Sbjct:   27 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 327
            S+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.440e-26
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 327
            S+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of CX299809 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 327
            S+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+   GVV+P+   +L  WQ  ++++ IL +L++ M +  N KL QPPEG
Sbjct:   34 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEG 142          
The following BLAST results are available for this feature:
BLAST of CX299809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1C_ARATH7.521e-6091.96Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UEV1D_ARATH3.733e-5991.07Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1A_ARATH1.377e-4574.31Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1B_ARATH2.871e-4371.56Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UBE2V_DICDI1.209e-3354.46Probable ubiquitin-conjugating enzyme E2 variant O... [more]
MMS2_SCHPO4.300e-3155.36Ubiquitin-conjugating enzyme spm2 OS=Schizosacchar... [more]
MMS2_YEAST9.914e-2852.68Ubiquitin-conjugating enzyme variant MMS2 OS=Sacch... [more]
UB2V1_HUMAN5.440e-2646.79Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo ... [more]
UB2V1_BOVIN5.440e-2646.79Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos t... [more]
UB2V1_MOUSE9.279e-2646.79Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC07002F11SK NTLeaf1 Citrus clementina cDNA clone C07002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299809 ID=CX299809; Name=CX299809; organism=Citrus clementina; type=EST; length=438bp
AGCTATGGAATGGATGATGGAGATGACATTTACATGCGCTCTTGGACTGG
CACCATTATCGGTCCTCACAATACTGTACATGAAGGTAGAATTTATCAGT
TGAAGCTGTTCTGTGATAAAGATTATCCAGAGAAGCCACCAAGTGTTCGT
TTTCATTCACGAATCAACATGACTTGTGTTAACCATGAAACTGGAGTGGT
GGAACCTAAAAAGTTTGGACTTCTTGTGAATTGGCAGCGAGAGTACACCA
TGGAGGATATACTCACACAACTGAAAAAGGAGATGGCAGCCCCACACAAT
CGGAAGCTGGTTCAACCTCCTGAGGGTACCTACTTCTAGCTTCTAAGATC
ATATAGGTATCATGGGGCTTATTGCATATTACAATATGCAATATATAGAT
TGTATTCCTGTGTTCATCCTGTTGATGTTAAGAACATA
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