CX299810

Overview
NameCX299810
Unique NameCX299810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig808 contig Ccv1_Contig808:385..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299810 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.610e-27
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 2
Query:    2 SGAHFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECRGNDKYKCGFNVFWKW 184
            SGA+FARA+TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC G DKYKCG NVFWKW
Sbjct:  111 SGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CX299810 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.452e-27
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 2
Query:    2 SGAHFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECRGNDKYKCGFNVFWKW 184
            SGA+FARAYTVEFG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC G +K+KCG NVFWKW
Sbjct:   52 SGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CX299810 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.594e-27
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 2
Query:    2 SGAHFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECRGNDKYKCGFNVFWKW 184
            SGA+FARAYTV+FG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC G +K+KCG NVFWKW
Sbjct:   85 SGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CX299810 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.964e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    2 SGAHFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECRGNDKYKCG 163
            S A+ AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC G D   CG
Sbjct:   78 SYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCG 131          
The following BLAST results are available for this feature:
BLAST of CX299810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH2.610e-2783.61Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE4.452e-2783.61Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU7.594e-2781.97Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA9.964e-1153.70Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC07002F12SK NTLeaf1 Citrus clementina cDNA clone C07002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299810 ID=CX299810; Name=CX299810; organism=Citrus clementina; type=EST; length=224bp
AAGTGGTGCACACTTTGCCAGAGCATACACTGTTGAATTTGGCACATGCA
AGTTCCCTGAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAA
GTGCCATTCATCTCGGATGATTTGGAATTGGAGTGCAGAGGGAATGATAA
ATACAAGTGTGGTTTCAATGTTTTCTGGAAATGGTGAAATGCGACAACTG
ATCTCTTTAAACATTTTATTTTAC
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