CX299812

Overview
NameCX299812
Unique NameCX299812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig389 contig Ccv1_Contig389:324..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.929e-43
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            LGEP Q+Y+DFAASLPA++CRY +YD+DFVTAENCQKS+IFFIAWSPDTA+VR KMIYASSKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:   44 LGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.291e-43
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            +GEPT++YEDFAASLP  ECRYAVYD+DFVTAENCQKSRIFFIAW PDTARVRSKMIYASSKDRFKRELDGIQVELQA DP+EMGLDV + RAN
Sbjct:   46 IGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.633e-42
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 292
            LGEPT++YEDF A LPA+ECRYAVYD+DF+T EN QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:   46 LGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.106e-42
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            +G+P QTYE+FAA LPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:   46 VGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.059e-41
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            +GEP  TYEDFAASLPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDV K R N
Sbjct:   46 VGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.383e-41
Identity = 78/94 (82.98%), Postives = 87/94 (92.55%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            +GEP   Y+DFAASLPA ECRYA++DYDFVT ENCQKS+IFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVELQATDP+E+GLDV + RAN
Sbjct:   46 VGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.963e-41
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            LG P +TYEDF  S+P +ECRYAVYDYDF T ENCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K R N
Sbjct:   46 LGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.809e-40
Identity = 76/94 (80.85%), Postives = 87/94 (92.55%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 283
            +GEP QT+ED AASLPA+ECRYA++D+DFV++E   +SRIFF+AWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVFK RAN
Sbjct:   46 IGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.208e-39
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 280
            LG P +TY+DF ASLPA ECRYAV+D+DF+T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:   44 LGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CX299812 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.883e-39
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 2
Query:    2 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 280
            LG P +TY+DF ASLPA+ECRYAV+D+DF T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:   33 LGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
The following BLAST results are available for this feature:
BLAST of CX299812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF2_ARATH1.929e-4385.11Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF1_PETHY3.291e-4387.23Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF2_PETHY1.633e-4284.54Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ARATH8.106e-4282.98Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF4_ARATH1.059e-4184.04Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF7_ORYSJ1.383e-4182.98Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF10_ARATH8.963e-4180.85Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF3_ARATH5.809e-4080.85Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF7_ARATH2.208e-3978.49Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF_BRANA2.883e-3978.49Actin-depolymerizing factor (Fragment) OS=Brassica... [more]

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Properties
Property NameValue
Genbank descriptionC07002G02SK NTLeaf1 Citrus clementina cDNA clone C07002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299812 ID=CX299812; Name=CX299812; organism=Citrus clementina; type=EST; length=397bp
ACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTG
CTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAG
AACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGC
AAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGA
GAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAG
ATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGA
TCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGTGAA
ATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
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