CX299827

Overview
NameCX299827
Unique NameCX299827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299827_ssr341 microsatellite CX299827_ssr341:341..352. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig541 contig Ccv1_Contig541:48..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.310e-83
Identity = 142/159 (89.31%), Postives = 153/159 (96.23%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVND 494
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDY DVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVND
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVND 159          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 3.941e-83
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVND 494
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDY DVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVND
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVND 159          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.710e-44
Identity = 93/158 (58.86%), Postives = 114/158 (72.15%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK-ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 482
            MP  +G R+RTR LFAR F+  G + LSTYL  +KIG+Y DV  N AVHKGMP K+YHGRTG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R K+ND++K DA  A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct:    1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.987e-43
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 482
            M   HG RSRTR +F R FRK G + LSTYL+ YK+GD  D+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 8.882e-43
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 482
            M   HG RSRTR +F R FRK G + +STYL+ YK+GD  D+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.979e-42
Identity = 83/159 (52.20%), Postives = 107/159 (67.30%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 488
            MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDY D+K  G VHKGMPHKFYHGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:    1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 482
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD  D+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = 3
Query:   18 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 482
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD  D+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 7.781e-39
Identity = 76/152 (50.00%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   33 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 482
            G R  TR +F+RPFRK G +PL+TY+R YK GD  D+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CX299827 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.733e-38
Identity = 75/152 (49.34%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   33 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYXDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 482
            G R  TR +F+RP+RK G +PL+TY+R YK GD  D+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:    6 GKRRGTRYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
The following BLAST results are available for this feature:
BLAST of CX299827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL212_ARATH2.310e-8389.3160S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH3.941e-8389.3160S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA4.710e-4458.8660S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21A_YEAST3.987e-4352.2360S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21B_YEAST8.882e-4351.5960S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_DICDI1.979e-4252.2060S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21B_SCHPO2.188e-4151.5960S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO2.188e-4151.5960S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21_HUMAN7.781e-3950.0060S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA1.733e-3849.3460S ribosomal protein L21 OS=Chinchilla lanigera G... [more]

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Properties
Property NameValue
Genbank descriptionC07002H08SK NTLeaf1 Citrus clementina cDNA clone C07002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299827 ID=CX299827; Name=CX299827; organism=Citrus clementina; type=EST; length=494bp
GAGCAGAGTACTCAAACATGCCGGCAGGTCACGGTTTGAGGTCCCGAACA
AGGGATTTGTTCGCACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTC
CACTTACCTTAGGACTTACAAAATCGGCGACTACNTTGACGTCAAAGTGA
ACGGCGCCGTTCACAAAGGTATGCCCCACAAGTTCTACCATGGGCGTACA
GGCCGTGTCTGGAATGTCACCAAGCGCGCCATCGGCGTGGAGATTAACAA
GCAGGTTGGTAACAGGATCATCAAGAAGAGGATTCATGTTCGTGTGGAGC
ATGTTCAACCTTCAAGGTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAG
AATGATGAGCTCAAGGCAGATGCTAAGGCAAGAGGTGAGGTCATCAGTAC
AAAGAGGCAGCCAAAGGGCCCTAAACCAGGTTTCATGGTGGAAGGTGCAA
CATTGGAAACTGTCACTCCTATTCCTTATGATGTCGTCAATGAT
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