CX299849

Overview
NameCX299849
Unique NameCX299849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299849_ssr1 microsatellite CX299849_ssr1:1..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig910 contig Ccv1_Contig910:499..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299849 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.318e-37
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = -1 
Query:  238 IIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 531
            I+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:  160 ILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CX299849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH2.318e-3774.49Uncharacterized protein At1g47420, mitochondrial O... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07003B10SK NTLeaf1 Citrus clementina cDNA clone C07003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299849 ID=CX299849; Name=CX299849; organism=Citrus clementina; type=EST; length=531bp
GAGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAA
AACACGATAAACCACAGATTTATTAATTCTTAGTTACTGCTGACAAAAGA
AGCTTTTATTCATCTGCCATGCAATTCCATCCGCGGTTTTGCTGGAGTGA
GTGTAACAAACTGTCTCCCACTACTCAGAAGCAAGTTCCAGATGTAAAGA
AACCCATAATCACAATAAACCTTTCAGCTATGGGCTAAGCTCTCTGTTCA
ACATATGACCCCGCAAGTCCTGAGGTTCCAAGAACAGTAACCTTTCCCCA
CTCAGAACCAAGGCCGGCACATCTCATCTTTAGGAAAATCATCTTTGAAC
CCAACTCTGTTTCTACCTTCTTCCGCAGATAGGATTCATCAGGGCCAAAT
GCATCCAAGTAGGTAGCATAACGTTGATAAACTGTACGAATTGCAGAGGA
TAATTCATTTGACAAGGGTTTTACATTCTCACCACTTAGCCCAATTTCAT
CATCAAATTCCATTTTAATGTTCATAATAAT
back to top