CX299861

Overview
NameCX299861
Unique NameCX299861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig151 contig Ccv1_Contig151:8..550. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.997e-60
Identity = 113/122 (92.62%), Postives = 122/122 (100.00%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 428
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKA+LKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 3.189e-58
Identity = 108/122 (88.52%), Postives = 120/122 (98.36%), Query Frame = 3
Query:   63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 428
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKA+LKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.999e-40
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX299861 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.725e-40
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 3
Query:   78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKADLKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 425
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K +++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
The following BLAST results are available for this feature:
BLAST of CX299861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS241_ARATH1.997e-6092.6240S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH3.189e-5888.5240S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT1.346e-4071.5540S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB1.346e-4071.5540S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE1.346e-4071.5540S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU1.346e-4071.5540S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN1.346e-4071.5540S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN1.346e-4071.5540S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA2.999e-4070.6940S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA8.725e-4070.6940S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC07003C11SK NTLeaf1 Citrus clementina cDNA clone C07003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299861 ID=CX299861; Name=CX299861; organism=Citrus clementina; type=EST; length=543bp
CTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCAGACTTTT
AACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGGAAGTT
CATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTTC
ATCCTGGCAGGGCCAATGTTTCCAAGGCTGATTTGAAGGAGAAGTTGGCA
AGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAGTTTCG
AACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTATGATT
CAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAAT
GGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAAAGGAA
GAACAGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTCAGATG
CTGCCAAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGAAGCCA
ATTTTCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTTT
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