CX299863

Overview
NameCX299863
Unique NameCX299863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7625 contig Ccv1_Contig7625:537..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299863 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 68/160 (42.50%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   21 LTVSSKPTDSSSLAA-GTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 485
            +++ + P  + SLA   TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   31 ISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187          
BLAST of CX299863 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 66/163 (40.49%), Postives = 80/163 (49.08%), Query Frame = 3
Query:   12 PKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 488
            P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+NILQPALNQ+N+MRS+
Sbjct:   40 PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199          
The following BLAST results are available for this feature:
BLAST of CX299863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH2.768e-2542.50Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL8.334e-2240.49Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC07003D02SK NTLeaf1 Citrus clementina cDNA clone C07003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299863 ID=CX299863; Name=CX299863; organism=Citrus clementina; type=EST; length=490bp
TGCAAAACCTCCCAAAAGGCCTCACGGTCTCATCAAAACCAACCGATTCA
TCATCACTAGCAGCCGGCACCGCCATTGCCGGAGCAATCTTCTCAACTCT
GAGCTCATGCGATGCTGCTTTTGCCGCACAACAAATAGCAGAAATAGCGG
AAGGTGACAACCGAGGGTTAGCACTATTGCTCCCAATCATCCCGGCCATA
GCCTGGGTGCTGTTCAACATTCTGCAGCCAGCACTCAACCAAATCAACCG
CATGCGCAGCACCAAGGGTGTGATCATTGGGCTCGGGCTTGGTGGGTTGG
CCGCAACAGGGCTGATGTCTATGCCACCCCATGCATCGGCTGCGGCCAGT
GAAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGCAGGGGTCAGCTTCT
GCTTATTGTTGTTACTCCTGCTATTCTCTGGGTGCTTTACAACATTTTGC
AGCCGGCTCTGAACCAAATCAACAGGATGAGGTCCGAGTG
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