CX299866

Overview
NameCX299866
Unique NameCX299866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10285 contig Ccv1_Contig10285:356..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.186e-40
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 361
            D+IDKK+YD  RK WTTKG             LK LEG LGDKP+FGG++FG+VD++LI +Y WFY YET G FS EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV V+R   GLE
Sbjct:  102 DYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.507e-40
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 361
            D+IDKK+YD  RK W TKG             LK LEG LGD+P+FGG++FG+VD++LI FY WFY YET G FS EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV V+R   GLE
Sbjct:  102 DYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.303e-34
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGL 358
            D+IDKK+Y + R+ W+ KG            +LKTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  FS+EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:  101 DYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.928e-31
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNL 352
            D+IDKK+YD+ +K W +KG            + K LE  L DKPF+G D FG+VDL LI F  WFYTYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:  100 DYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.212e-30
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGL 358
            ++ID K+Y + R+ W+ KG            + KTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  FS+EAEC K + W + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:  101 NYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.565e-27
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 361
            D++D+K+YD   + W  KG            +L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG FSVE   P+  AW +RC + ++VAK LP  +KV++FV V++   G+E
Sbjct:  109 DYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of CX299866 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.463e-27
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 2
Query:    2 DFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 361
            D++D+K+YD   + W  KG            +L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG FSVE   P+  AW +RC + ++V K LP  +KV++FV V++   G+E
Sbjct:  109 DYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKKKYGVE 231          
The following BLAST results are available for this feature:
BLAST of CX299866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GSTX4_TOBAC1.186e-4061.67Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC4.507e-4060.83Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTXA_TOBAC6.303e-3449.58Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX3_SOYBN2.928e-3151.28Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTX1_NICPL7.212e-3045.38Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSI2.565e-2743.09Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSJ7.463e-2742.28Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionC07003D05SK NTLeaf1 Citrus clementina cDNA clone C07003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299866 ID=CX299866; Name=CX299866; organism=Citrus clementina; type=EST; length=413bp
AGATTTCATTGACAAGAAGATGTACGATTCTTCGAGGAAGACATGGACCA
CAAAGGGAGAAGAGCAGGAGGCAGCTAAGAAGGAGTTCTTTGAAGTTCTG
AAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTTGGAGGAGACAA
TTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATTGTTGGTTTTACA
CGTATGAGACATGTGGAAAGTTCAGCGTCGAGGCTGAGTGCCCCAAGTTC
ATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACTGTTGCCAAGGCACT
TCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCAGTGATGAGGACAAATT
TAGGATTGGAGTAGAGAGAAAAAGGGACATACCTAGGAGCTGAGAATAAG
TCAAGCAGCGCAA
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