CX299867

Overview
NameCX299867
Unique NameCX299867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10872 contig Ccv1_Contig10872:387..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299867 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.865e-44
Identity = 87/123 (70.73%), Postives = 98/123 (79.67%), Query Frame = 3 
Query:    3 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 371
            DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   76 DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198
[Close]
BLAST of CX299867 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.353e-42
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 3 
Query:    3 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 371
            DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   90 DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
[Close]
BLAST of CX299867 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.565e-40
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 3 
Query:    3 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 371
            DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   68 DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190
The following BLAST results are available for this feature:
BLAST of CX299867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU8.865e-4470.73Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH6.353e-4267.48Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH1.565e-4065.85Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionC07003D06SK NTLeaf1 Citrus clementina cDNA clone C07003D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299867 ID=CX299867; Name=CX299867; organism=Citrus clementina; type=EST; length=381bp
ATGATAGAGATGTTGCTCTTGCAGAGGTCGAAAAGGAAAAGAGAGAGTCT
TTTATCAAGGCATGGGAAGAGAGTGAAAAAACAAAAGCAGAGAATAAGGC
TCAGAAAAAGCTCTCAGCTGTTGCTGCATGGGAAAATAGCAAGAAAGCAT
CTCTAGAAGCCAAACTGAAAAAGATTGAGGAACAACTGGAGAGGAAGAAG
GCAGAGTATGCTGAAAAAATGAAAAATAAGGTAGCTCTAGTTCACAAGGA
AGCAGAAGAGAAAAGGGCAATGGTTGAAGCTAGACGGGGAGAAGACGTTC
TTAAGGCTGAGGAGATAGCTGCAAAATATCGGGCTACTGGGACCACTCCA
AAGAAGCTCCTCGGTTGCTTCTGAAATCAAA
back to top