CX299869

Overview
NameCX299869
Unique NameCX299869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:1065..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 9.556e-74
Identity = 137/163 (84.05%), Postives = 149/163 (91.41%), Query Frame = 1
Query:    1 FNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            F  RAGDGT SV+MATLLFIIPS  +KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTG
Sbjct:  349 FAGRAGDGTVSVMMATLLFIIPSNIKKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTG 511          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.402e-34
Identity = 67/164 (40.85%), Postives = 103/164 (62.80%), Query Frame = 1
Query:    1 FNDRAGDGTASVVMATLLFIIPSM-KQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            F     DGT ++ ++ LLF+IP+  K+K ++++DW   K LPW +++L G G A+A G+  SGLA+ L + L  +E    L I  ++ +    +TE TSN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I I+ M   G
Sbjct:  322 FTSEVADGTIAMFISVLLFLIPAKNKEKHKRIIDWEVAKDLPWGVLILFGGGLALAKGISESGLANWLGEQLKLIEGVSPLVIVLVITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVG 485          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.674e-33
Identity = 70/171 (40.94%), Postives = 101/171 (59.06%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+ ++DM++TG
Sbjct:  376 DAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.184e-33
Identity = 73/174 (41.95%), Postives = 107/174 (61.49%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMKQKGE----------------KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            D T ++ +ATLLFI+PS K K                   L+DW   + K+PW I+LLLG GFA+A G   SGL+  + K ++ L A P  AI  I+ L+ A+ TE TSN ATTTL LP+   +++++ ++PL +M+P  + A F+F+LP  TP N + FT GH+++ DM+KTG
Sbjct:  356 DATVAIFVATLLFIVPSQKPKFNFRSQTEEERKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGSEASGLSVWMGKQMEPLHAVPPAAITLILSLLVAVFTECTSNVATTTLFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTG 529          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.823e-32
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+ ++DM++TG
Sbjct:  376 DAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.000e-30
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMKQ-------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            D    V + T+LF  PS +              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P      ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+ ++DM++TG
Sbjct:  378 DAVTGVAIVTILFFFPSQRPSLKWWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTG 548          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
BLAST of CX299869 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   19 DGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 489
            DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G
Sbjct:  329 DGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVG 486          
The following BLAST results are available for this feature:
BLAST of CX299869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TDT_ARATH9.556e-7484.05Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
SDCS_STAS17.402e-3440.85Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A3_MOUSE3.674e-3340.94Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A5_HUMAN8.184e-3341.95Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A3_RAT1.823e-3240.35Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN1.000e-3039.18Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
SDCS_STAAR1.706e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN1.706e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM1.706e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC1.706e-3039.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003D08SK NTLeaf1 Citrus clementina cDNA clone C07003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299869 ID=CX299869; Name=CX299869; organism=Citrus clementina; type=EST; length=489bp
TTCAATGACCGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATT
GTTGTTCATAATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATT
GGAACAAATGCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCT
GGCTTTGCTATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCT
GTCAAAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCAC
CTATCGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAAT
GCCACAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTAT
GCATGTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAAT
TTTCTTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACA
ACCGGGCACATCGAAATTCAAGATATGATCAAGACAGGG
back to top