CX299871

Overview
NameCX299871
Unique NameCX299871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:1..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.203e-80
Identity = 137/187 (73.26%), Postives = 163/187 (87.17%), Query Frame = 1
Query:    1 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRDVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            VV+QYG+ I+++LL++ +P+KICSQI LCTFDG+R VSMGIESVV EN  ++S   HD MCS CEM VVWMQNQL+QNQT+ERI+NY+NELCDR+PSPMG+SAVDC +LSS+P VSFTIGGKIFDL P++YILKVGEG  AQCISGF+A D+ PPRGPLWILGDVFMG YHTVFD+  +RVG AEAA
Sbjct:  327 VVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 8.921e-76
Identity = 130/187 (69.52%), Postives = 160/187 (85.56%), Query Frame = 1
Query:    1 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRDVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            +VSQYG++I+++LLA+ +P+KICSQ+GLCTFDG+R VS GI SVV +   +++G   D MCS CEMAVVWMQNQL QN+TQ+ IL+YVN+LC+RLPSPMGESAVDC  L S+P + FTIGGK F L P++YILKVGEG AAQCISGF+A+D+ PPRGPLWILGDVFMGPYHTVFDY  +R+GFA+AA
Sbjct:  322 IVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 3.748e-74
Identity = 128/187 (68.45%), Postives = 157/187 (83.96%), Query Frame = 1
Query:    1 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRDVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            VVSQYG++I+++LLA+ +P KICSQ+GLCTFDG   VS GI+SVV +    ++G     MC+ CEMAVVWMQNQL QN+TQ+ ILNY+N+LCD+LPSPMGES+VDC  L+S+P +SFTIGGK F L P++YILKVGEG AAQCISGF+A+D+ PPRGPLWILGDVFMG YHTVFDY  MRVGFA++A
Sbjct:  323 VVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDEAGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 3.879e-71
Identity = 124/187 (66.31%), Postives = 157/187 (83.96%), Query Frame = 1
Query:    1 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRDVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            +V QYG+ +I MLL++++P+KICSQ+ LC+FDGS D SM IESVV ++  ++SG      C  C   VVWMQNQ++QN+T+E I+NYV++LC+RLPSPMGESAVDCS LSS+P ++FT+GGK F+L+P+QY+LKVGEG  AQCISGF+A+DVAPP GPLWILGDVFMG YHTVFDY N+RVGFAEAA
Sbjct:  289 LVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSG--LPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.428e-65
Identity = 115/187 (61.50%), Postives = 147/187 (78.61%), Query Frame = 1
Query:    1 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRDVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            VVS+YGE I+N+L+A+ +PQK+CSQ+GLC FDG R VS GIESVV + N  +     DAMCS CEMAVVW++NQL++N+T+E ILNY N+LC+RLPSP GES V C ++S +P ++FTI  K F LTP+QYI+K+ +G    CISGF A D+ PPRGPLWILGDVFMG YHTVFD+   R+GFA++A
Sbjct:  315 VVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGS-----DAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  283 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 558
            +P   GE  + C ++SSLP V   +GGK ++L PD+YILKV +G    C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFA A
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  286 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 558
            P   GE  V+C  + SLP++SFT+GG+++ LT +QYILKV +     C+SGF  LD+  P GPLWILGDVFMG Y+TVFD    RVGFA+A
Sbjct:  305 PLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.646e-24
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  283 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            +P   GE  + C ++SSLPI++F +GG+ ++L P++YILKV +     C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVGFA+AA
Sbjct:  313 VPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.035e-23
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  283 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 561
            +P   GE  + C ++S+LP ++  +GGK + L+P+ Y LKV +     C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFAEAA
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of CX299871 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  286 PSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 555
            P   G+  + C ++SSLP+V+  +GGK + LT +QY+ KV       C+SGFS LDV PP GPLWILGDVF+GPY+TVFD  N  VGFA+
Sbjct:  307 PLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
The following BLAST results are available for this feature:
BLAST of CX299871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ASPR_CUCPE1.203e-8073.26Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR_HORVU8.921e-7669.52Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPR1_ORYSJ3.748e-7468.45Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA3.879e-7166.31Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ1.428e-6561.50Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_MOUSE9.362e-2555.43Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CHIHA1.223e-2456.04Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_RAT4.646e-2452.69Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN1.035e-2351.61Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_CHICK1.352e-2354.44Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07003D11SK NTLeaf1 Citrus clementina cDNA clone C07003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299871 ID=CX299871; Name=CX299871; organism=Citrus clementina; type=EST; length=583bp
GTAGTTTCACAATATGGAGAGGAGATCATCAATATGCTTTTAGCTAAGGA
TGAACCTCAAAAAATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGT
CTCGAGATGTGAGTATGGGCATTGAGAGTGTCGTTCCTGAGAATAATCAT
AGAGCATCTGGTGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGC
AGTTGTGTGGATGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCA
TTCTTAACTATGTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGA
GAATCGGCTGTTGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTT
TACGATTGGTGGAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCA
AAGTGGGCGAGGGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTA
GATGTTGCCCCACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTAT
GGGTCCCTACCACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTG
CTGAAGCCGCGTAAATAAGTTTGTTTTAAATAT
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