CX299872

Overview
NameCX299872
Unique NameCX299872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299872_ssr319 microsatellite CX299872_ssr319:319..330. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299872 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.587e-29
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  121 FLNGSTPLTRLSKPTSTPQNLPYASFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSF 420
            F +GSTPL+ LSKP S P +   A  P I+AMK MQGRVVCA+SDKTVAVEVVRL PHP            QAHDP+NQF+VGD+V+LEKSRPISKTKSF
Sbjct:   19 FAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSF 118          
BLAST of CX299872 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.439e-22
Identity = 56/103 (54.37%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  121 FLNGSTPLTRLSKPTSTPQNLPYAS---FPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSF 420
            F      L R S P S+PQ         FP IKAMK M+G+VVCAS +KTVAVEV RL PHP            QAHDPEN F+VGD+VQL K+RPISK K+F
Sbjct:    4 FTGNGIGLNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTF 106          
BLAST of CX299872 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  202 QIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSF 420
            +I+A K++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L +SRPISKTK F
Sbjct:   33 RIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHF 105          
BLAST of CX299872 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  133 STPLTRLSKPTSTPQNLPYASFPQIKAMKKMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSF 420
            S+P   +S P     +       +I+A +++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L+ SRPISKTK F
Sbjct:    5 SSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHF 100          
The following BLAST results are available for this feature:
BLAST of CX299872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RR17_ARATH1.587e-2966.0030S ribosomal protein S17, chloroplastic OS=Arabid... [more]
RR17_PEA1.439e-2254.3730S ribosomal protein S17, chloroplastic (Fragment... [more]
RR17_ORYSJ5.296e-1757.5330S ribosomal protein S17, chloroplastic OS=Oryza ... [more]
RR17_MAIZE6.917e-1746.8830S ribosomal protein S17, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionC07003D12SK NTLeaf1 Citrus clementina cDNA clone C07003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299872 ID=CX299872; Name=CX299872; organism=Citrus clementina; type=EST; length=422bp
ATTGCAAGAGCAACAAAATCAGTTTCTCTGAATTATCTTTCATTCTTATC
TTCAAAGCCCACGATGTCCGTCATCACCTCATCACTTCACTCTCTGAAAC
TCTCATCTCCCAAATCTCGCTTCCTCAATGGCTCCACTCCTCTTACTCGC
CTCTCAAAACCCACTTCCACTCCGCAAAATCTCCCCTATGCTTCGTTTCC
TCAAATCAAGGCCATGAAAAAAATGCAGGGCAGAGTTGTTTGTGCATCAA
GCGACAAGACAGTTGCTGTTGAAGTTGTGCGTTTAGACCCACATCCAAAG
TACAAAAGAAGAATCAGAAAGAAGAAGAAGTATCAAGCTCATGACCCTGA
GAATCAATTCCAAGTTGGTGACCTTGTTCAGCTTGAAAAGTCCAGGCCCA
TTAGCAAGACTAAATCTTTTAT
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